View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2976_high_4 (Length: 213)
Name: NF2976_high_4
Description: NF2976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2976_high_4 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
| [»] chr1 (2 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 149; Significance: 7e-79; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 18 - 198
Target Start/End: Complemental strand, 38919880 - 38919701
Alignment:
| Q |
18 |
gtacaaatatcatttctcttttgattatgatttagctttgactcaaataataatataatcaaaggaaaaggctaaaatgcacgacataaaatttggtcac |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| ||||| |
|
|
| T |
38919880 |
gtacaaatatcatttctcttttgattatgattaa-ctttgactcaaataataatataatcaaaggaaaaagataaaatgcacgacataaaatttcgtcac |
38919782 |
T |
|
| Q |
118 |
cattgcacgaatgaattgtatctaggagttatagtacttttttaattctgtttttacttcaaatgatcacactatagtcta |
198 |
Q |
| |
|
||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38919781 |
cattgcacgaatgaattgtatgtagtagttatagtacttttttaattctgtttttacttcaaatgatcacactatagtcta |
38919701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 81 - 211
Target Start/End: Complemental strand, 27405403 - 27405275
Alignment:
| Q |
81 |
ggaaaaggctaaaatgcacgacataaaatttggtcaccattgcacgaatgaattgtatctaggagttatagtacttttttaattctgtttttacttcaaa |
180 |
Q |
| |
|
|||||| ||||||| ||||||||||||||| ||||||||||||||||||| |||||| | | ||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
27405403 |
ggaaaaagctaaaacacacgacataaaatttcgtcaccattgcacgaatgagttgtatgttgtagttagagtacttttttaattctgtttttacttcaaa |
27405304 |
T |
|
| Q |
181 |
tgatcacactatagtctagcatatgtgtttg |
211 |
Q |
| |
|
|||| |||| |||||||||||||||||||| |
|
|
| T |
27405303 |
tgat--cactgtagtctagcatatgtgtttg |
27405275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 46
Target Start/End: Complemental strand, 53473627 - 53473599
Alignment:
| Q |
18 |
gtacaaatatcatttctcttttgattatg |
46 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
53473627 |
gtacaaatatcatttctcttttgattatg |
53473599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 81 - 213
Target Start/End: Original strand, 5589764 - 5589894
Alignment:
| Q |
81 |
ggaaaaggctaaaatgcacgacataaaatttggtcaccattgcacgaatgaattgtatctaggagttatagtacttttttaattctgtttttacttcaaa |
180 |
Q |
| |
|
|||||| ||||||| |||||||||||||||| |||||||||||||||||| ||||| | | ||||| | ||||||||||||| || |||||||||||| |
|
|
| T |
5589764 |
ggaaaaagctaaaacgcacgacataaaatttcttcaccattgcacgaatgagttgtaagttgtagttagaatacttttttaattatgcttttacttcaaa |
5589863 |
T |
|
| Q |
181 |
tgatcacactatagtctagcatatgtgtttgtc |
213 |
Q |
| |
|
||| |||| |||||||||||||||||||||| |
|
|
| T |
5589864 |
cgat--cactgtagtctagcatatgtgtttgtc |
5589894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 153 - 213
Target Start/End: Original strand, 228938 - 228996
Alignment:
| Q |
153 |
acttttttaattctgtttttacttcaaatgatcacactatagtctagcatatgtgtttgtc |
213 |
Q |
| |
|
|||||||||||| ||||||||||||||||| ||| | |||||||||||||||||||||| |
|
|
| T |
228938 |
acttttttaattgtgtttttacttcaaatggtcaaa--gtagtctagcatatgtgtttgtc |
228996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 153 - 213
Target Start/End: Complemental strand, 50525976 - 50525918
Alignment:
| Q |
153 |
acttttttaattctgtttttacttcaaatgatcacactatagtctagcatatgtgtttgtc |
213 |
Q |
| |
|
|||||||||||| ||||||||||||||||| ||| | || ||||||||||||||||||| |
|
|
| T |
50525976 |
acttttttaattatgtttttacttcaaatggtcaaa--gtaatctagcatatgtgtttgtc |
50525918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University