View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2976_low_2 (Length: 370)
Name: NF2976_low_2
Description: NF2976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2976_low_2 |
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| [»] scaffold0262 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 254; Significance: 1e-141; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 17 - 278
Target Start/End: Original strand, 33416188 - 33416449
Alignment:
| Q |
17 |
agatgaaacaacagagtgagcatcagaagaaggtggtggagaaggagcaggtgcaccttcggctagaacagtgatgaccaacttcatttgacgagccgaa |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33416188 |
agatgaaacaacagagtgagcatcagaagaaggtggtggagaaggagcaggtgcaccttcggctagaacagtgatgaccaacttcatttgacgagccgaa |
33416287 |
T |
|
| Q |
117 |
cagtgatcagctacgccacaaacataccactttcttccttcagtttttagttgaatgatatcctttccggtagaaagtgcttcgttttttggtggaaaag |
216 |
Q |
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||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33416288 |
cagtgatcagcaactccacaaacataccactttcttccttcagtttttagttgaatgatatcctttccggtagaaagtgcttcgttttttggtggaaaag |
33416387 |
T |
|
| Q |
217 |
tgcagctctggaagagtgtgccattcactttaaaaacattgtgccttgaagggtcatagttg |
278 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33416388 |
tgcagctctggaagagtgtgccattcactttaaaaacattgtgccttgaagggtcatagttg |
33416449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 17 - 278
Target Start/End: Original strand, 33410339 - 33410600
Alignment:
| Q |
17 |
agatgaaacaacagagtgagcatcagaagaaggtggtggagaaggagcaggtgcaccttcggctagaacagtgatgaccaacttcatttgacgagccgaa |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33410339 |
agatgaaacaacagagtgagcatcagaagaaggtggtggagaaggagcaggtgcaccttcggctagaacagtgatgaccaacttcatttgacgagccgaa |
33410438 |
T |
|
| Q |
117 |
cagtgatcagctacgccacaaacataccactttcttccttcagtttttagttgaatgatatcctttccggtagaaagtgcttcgttttttggtggaaaag |
216 |
Q |
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||||||||||| || |||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| |
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| T |
33410439 |
cagtgatcagcaactccacaaacataccactttcttccttctgtttttagttgaatgatatcctttcctgtagaaagtgcttcattttttggtggaaaag |
33410538 |
T |
|
| Q |
217 |
tgcagctctggaagagtgtgccattcactttaaaaacattgtgccttgaagggtcatagttg |
278 |
Q |
| |
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||||||| || |||||||||||||| ||||| |||||||||||||||| || ||||||||| |
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| T |
33410539 |
tgcagctttgaaagagtgtgccatttactttgaaaacattgtgccttgccggatcatagttg |
33410600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 17 - 278
Target Start/End: Original strand, 33424241 - 33424502
Alignment:
| Q |
17 |
agatgaaacaacagagtgagcatcagaagaaggtggtggagaaggagcaggtgcaccttcggctagaacagtgatgaccaacttcatttgacgagccgaa |
116 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33424241 |
agatgaaacaacagagtgagcatcagaagaaggtggtggagaaggagcaggtgcaccttcggctagaacagtgatgaccaacttcatttgacgagccgaa |
33424340 |
T |
|
| Q |
117 |
cagtgatcagctacgccacaaacataccactttcttccttcagtttttagttgaatgatatcctttccggtagaaagtgcttcgttttttggtggaaaag |
216 |
Q |
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||||||||||| || |||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| |
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| T |
33424341 |
cagtgatcagcaactccacaaacataccactttcttccttctgtttttagttgaatgatatcctttcctgtagaaagtgcttcattttttggtggaaaag |
33424440 |
T |
|
| Q |
217 |
tgcagctctggaagagtgtgccattcactttaaaaacattgtgccttgaagggtcatagttg |
278 |
Q |
| |
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||||||| || |||||||||||||| ||||| |||||||||||||||| || ||||||||| |
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| T |
33424441 |
tgcagctttgaaagagtgtgccatttactttgaaaacattgtgccttgccggatcatagttg |
33424502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 14 - 278
Target Start/End: Complemental strand, 33428351 - 33428087
Alignment:
| Q |
14 |
cacagatgaaacaacagagtgagcatcagaagaaggtggtggagaaggagcaggtgcaccttcggctagaacagtgatgaccaacttcatttgacgagcc |
113 |
Q |
| |
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|||||||||||||||||| |||||||||||||||||||| ||||||||||||| |||| ||| |||||||||||||||| |||||||| |||||||| |
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| T |
33428351 |
cacagatgaaacaacagaatgagcatcagaagaaggtggaagagaaggagcaggggcactttctgctagaacagtgatgatgaacttcatgtgacgagca |
33428252 |
T |
|
| Q |
114 |
gaacagtgatcagctacgccacaaacataccactttcttccttcagtttttagttgaatgatatcctttccggtagaaagtgcttcgttttttggtggaa |
213 |
Q |
| |
|
||||||| |||||||| ||||||||||||||||||| || ||||||| ||||| |||| ||||||||||||||||||||||||||||||| |||||||| |
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| T |
33428251 |
gaacagttatcagctatgccacaaacataccactttgtttcttcagtctttaggggaataatatcctttccggtagaaagtgcttcgttttgtggtggaa |
33428152 |
T |
|
| Q |
214 |
aagtgcagctctggaagagtgtgccattcactttaaaaacattgtgccttgaagggtcatagttg |
278 |
Q |
| |
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||||||| ||||| |||| |||||| |||||||| ||||||||||| |||||||||||||||||| |
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| T |
33428151 |
aagtgcatctctgaaagaatgtgccgttcactttgaaaacattgtgtcttgaagggtcatagttg |
33428087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 17 - 247
Target Start/End: Original strand, 33436393 - 33436623
Alignment:
| Q |
17 |
agatgaaacaacagagtgagcatcagaagaaggtggtggagaaggagcaggtgcaccttcggctagaacagtgatgaccaacttcatttgacgagccgaa |
116 |
Q |
| |
|
|||||| |||| ||||||||||| |||||| || || || |||||||||||||| ||||| ||||||||||||||||| || ||||||||| |||| ||| |
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| T |
33436393 |
agatgatacaatagagtgagcattagaagatggaggaggggaaggagcaggtgcgccttctgctagaacagtgatgacaaatttcatttgatgagcagaa |
33436492 |
T |
|
| Q |
117 |
cagtgatcagctacgccacaaacataccactttcttccttcagtttttagttgaatgatatcctttccggtagaaagtgcttcgttttttggtggaaaag |
216 |
Q |
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|| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||| |
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| T |
33436493 |
caatgatcagctacgccacaaacataccactttcttccttctgtttttagttgaatgatatcctttcccgtagagagtgcttcattttttggtggaaaag |
33436592 |
T |
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| Q |
217 |
tgcagctctggaagagtgtgccattcacttt |
247 |
Q |
| |
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||||| || || ||||| ||||||||||| |
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| T |
33436593 |
tgcagtccttaaaaagtgtaccattcacttt |
33436623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 305 - 353
Target Start/End: Original strand, 33416476 - 33416524
Alignment:
| Q |
305 |
ttagatcatgtttgataaatacaaaagttaattataactatgagataca |
353 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33416476 |
ttagatcatgtttgataaatacaaaagttaattataactatgagataca |
33416524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0262 (Bit Score: 133; Significance: 4e-69; HSPs: 1)
Name: scaffold0262
Description:
Target: scaffold0262; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 17 - 221
Target Start/End: Complemental strand, 5384 - 5180
Alignment:
| Q |
17 |
agatgaaacaacagagtgagcatcagaagaaggtggtggagaaggagcaggtgcaccttcggctagaacagtgatgaccaacttcatttgacgagccgaa |
116 |
Q |
| |
|
|||||| |||| ||||||||||| |||||| || || | |||||||||| ||| ||||| ||||||||||||||||| ||||| |||||| |||| ||| |
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| T |
5384 |
agatgatacaatagagtgagcattagaagatggaggagtggaaggagcagatgcgccttctgctagaacagtgatgacaaactttatttgatgagcagaa |
5285 |
T |
|
| Q |
117 |
cagtgatcagctacgccacaaacataccactttcttccttcagtttttagttgaatgatatcctttccggtagaaagtgcttcgttttttggtggaaaag |
216 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| |
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| T |
5284 |
caatgatcagctacgccacaaacataccactttcttccttcagtttttagttgaatgatatcctttcctgtagaaagtgcttcattttttggtggaaaag |
5185 |
T |
|
| Q |
217 |
tgcag |
221 |
Q |
| |
|
||||| |
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|
| T |
5184 |
tgcag |
5180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 56 - 260
Target Start/End: Complemental strand, 24985253 - 24985049
Alignment:
| Q |
56 |
agaaggagcaggtgcaccttcggctagaacagtgatgaccaacttcatttgacgagccgaacagtgatcagctacgccacaaacataccactttcttcct |
155 |
Q |
| |
|
|||||| | |||||||||||| |||| ||| ||||||| | ||||||||||||||| | || |||| || ||||| |||||||||||||||||| |
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| T |
24985253 |
agaaggcgaaggtgcaccttcttctagtacattgatgacaagcttcatttgacgagcagcgcaatgatttgcctttccacatacataccactttcttcct |
24985154 |
T |
|
| Q |
156 |
tcagtttttagttgaatgatatcctttccggtagaaagtgcttcgttttttggtggaaaagtgcagctctggaagagtgtgccattcactttaaaaacat |
255 |
Q |
| |
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|| ||||| |||||||| | ||||||||||| ||||||||||| |||| || ||||||||||||||| || |||||| | |||| |||||| || |||| |
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| T |
24985153 |
tcggttttcagttgaataacgtcctttccggtggaaagtgcttcattttctgatggaaaagtgcagctttgaaagagtttaccatccactttgaagacat |
24985054 |
T |
|
| Q |
256 |
tgtgc |
260 |
Q |
| |
|
||||| |
|
|
| T |
24985053 |
tgtgc |
24985049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 56 - 260
Target Start/End: Complemental strand, 24991083 - 24990879
Alignment:
| Q |
56 |
agaaggagcaggtgcaccttcggctagaacagtgatgaccaacttcatttgacgagccgaacagtgatcagctacgccacaaacataccactttcttcct |
155 |
Q |
| |
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|||||| | |||||||||||| |||| ||| ||||||| | ||||||||||||||| | || |||| || ||||| |||||||||||||||||| |
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| T |
24991083 |
agaaggcgaaggtgcaccttcttctagtacattgatgacaagcttcatttgacgagcagcgcaatgatttgcctttccacatacataccactttcttcct |
24990984 |
T |
|
| Q |
156 |
tcagtttttagttgaatgatatcctttccggtagaaagtgcttcgttttttggtggaaaagtgcagctctggaagagtgtgccattcactttaaaaacat |
255 |
Q |
| |
|
|| ||||| |||||||| | ||||||||||| ||||||||||| |||| || ||||||||||||||| || |||||| | |||| |||||| || |||| |
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| T |
24990983 |
tcggttttcagttgaataacgtcctttccggtggaaagtgcttcattttctgatggaaaagtgcagctttgaaagagtttaccatccactttgaagacat |
24990884 |
T |
|
| Q |
256 |
tgtgc |
260 |
Q |
| |
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||||| |
|
|
| T |
24990883 |
tgtgc |
24990879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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