View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2976_low_3 (Length: 248)
Name: NF2976_low_3
Description: NF2976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2976_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 32318073 - 32317851
Alignment:
| Q |
1 |
ttggattaatcaatgcacatttagaaggcttggatgaaaacacttctttgccatccatactatcatgaagaaaccaattcaaatttgcactatagccata |
100 |
Q |
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| T |
32318073 |
ttggattaatcaatgcacatttagaaggcttggatgaaaacacttctttgccatccatactatcatgaagaaaccaattcaaatttgcactatagccata |
32317974 |
T |
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| Q |
101 |
aacagattgttcaaatttccatggctttaaactaacggttgttgattctccggctgatactttgagtcctaaaggatttggtggctcaattgaagcttct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32317973 |
aacagattgttcaaatttccatggctttaaactaacggttgttgattctccggctgatactttgagtcctaaaggatttggtggctcaattgaagcttct |
32317874 |
T |
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| Q |
201 |
atacctttgtcaataccaatttc |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
32317873 |
atacctttgtcaataccaatttc |
32317851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 102; Significance: 9e-51; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 6 - 171
Target Start/End: Complemental strand, 36042830 - 36042665
Alignment:
| Q |
6 |
ttaatcaatgcacatttagaaggcttggatgaaaacacttctttgccatccatactatcatgaagaaaccaattcaaatttgcactatagccataaacag |
105 |
Q |
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||||| ||| || |||| |||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | |
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| T |
36042830 |
ttaattaattcaaattttgaaggctttgttgaaaacacttctttgccatccatactatcatgaagaaaccaattcaaatttgcactataaccataaaccg |
36042731 |
T |
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| Q |
106 |
attgttcaaatttccatggctttaaactaacggttgttgattctccggctgatactttgagtccta |
171 |
Q |
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||| ||| |||||||||||||||||||| | ||||| |||||||| |||||||| |||||||||| |
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| T |
36042730 |
attcttcgaatttccatggctttaaactcatcgttgtggattctccagctgatacgttgagtccta |
36042665 |
T |
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