View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2977_high_10 (Length: 301)
Name: NF2977_high_10
Description: NF2977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2977_high_10 |
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Alignment Details
Target: chr1 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 289
Target Start/End: Original strand, 34536315 - 34536603
Alignment:
| Q |
1 |
taagaaataagaatgctgtgtcatatattaattgaattcattgcttttgatcagagaggttggagccgacgaggcgaagcaggtgattggttgaagatga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34536315 |
taagaaataagaatgctgtgtcatatattaattgaattcattgcttttgatcagagaggttggagccgacgaggcgaagcaggtgattggttgaagatga |
34536414 |
T |
|
| Q |
101 |
agagggacaggctcaatgacttgcccaatgaaattctgcttcatatattgttatttcttatgatagaagatgttgttaagactagcattttgtcgaaacg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
34536415 |
agagggacaggctcaatgacttgcccaatgaaattctgcttcatatattgtcatttcttatgatagaagatgttgttaagaccagcattttgtcgaaacg |
34536514 |
T |
|
| Q |
201 |
gtggaagaatctttggaaatacctccctgatcttaaattgcatacttctgaattcagcaacccgtatcttttctcggaatgtgtgtctg |
289 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34536515 |
gtggaagaatctttggaaatacctccctgatcttaaattgcatacttctgaattcagcaacccgtatcttttctcggaatgtgtgtctg |
34536603 |
T |
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