View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2977_high_13 (Length: 265)
Name: NF2977_high_13
Description: NF2977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2977_high_13 |
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Alignment Details
Target: chr3 (Bit Score: 86; Significance: 3e-41; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 113 - 214
Target Start/End: Complemental strand, 20592730 - 20592629
Alignment:
| Q |
113 |
aacccaatcgttctcccttttcctccattctcaatcaaaacccaatccccaaaccaccaccgtgaaaccaaaactcagaccccaaaccaccgtgaaacac |
212 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| || ||||||||||||||||||||||||||| |
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| T |
20592730 |
aacccaatcgttctcccttttcctccattctcaatcgaaacccaatccccaaaccaccactgtgaaacccaagctcagaccccaaaccaccgtgaaacac |
20592631 |
T |
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| Q |
213 |
ca |
214 |
Q |
| |
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|| |
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| T |
20592630 |
ca |
20592629 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 86 - 122
Target Start/End: Complemental strand, 20592767 - 20592731
Alignment:
| Q |
86 |
cgaactccaacaaaccaccaccgtgaaaacccaatcg |
122 |
Q |
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||||||||| ||||||||||||||||||||||||||| |
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| T |
20592767 |
cgaactccaccaaaccaccaccgtgaaaacccaatcg |
20592731 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 111 - 214
Target Start/End: Complemental strand, 7653667 - 7653564
Alignment:
| Q |
111 |
aaaacccaatcgttctcccttttcctccattctcaatcaaaacccaatccccaaaccaccaccgtgaaaccaaaactcagaccccaaaccaccgtgaaac |
210 |
Q |
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||||||||| ||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
7653667 |
aaaacccaactgttctcccttttcctccattctcaatcgaaacacaatccccaaaccaccaccgtgaaacccaaactcagaccccaaaccaccgtgaaac |
7653568 |
T |
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| Q |
211 |
acca |
214 |
Q |
| |
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|||| |
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| T |
7653567 |
acca |
7653564 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 121 - 214
Target Start/End: Original strand, 4059294 - 4059386
Alignment:
| Q |
121 |
cgttctcccttttcctccattctcaatcaaaacccaatccccaaaccaccaccgtgaaaccaaaactcagaccccaaaccaccgtgaaacacca |
214 |
Q |
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||||||||||||||||||||| ||||||| ||||||||||| ||||||||||||||||||| ||| |||||||||||||||||||||||||||| |
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| T |
4059294 |
cgttctcccttttcctccattttcaatcataacccaatccc-aaaccaccaccgtgaaacccaaagtcagaccccaaaccaccgtgaaacacca |
4059386 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 121 - 214
Target Start/End: Original strand, 11362342 - 11362434
Alignment:
| Q |
121 |
cgttctcccttttcctccattctcaatcaaaacccaatccccaaaccaccaccgtgaaaccaaaactcagaccccaaaccaccgtgaaacacca |
214 |
Q |
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||||||||||||||||||||| |||||| |||||||||| ||||||||||||||||||| ||| |||||||||||||||||||||||||||| |
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| T |
11362342 |
cgttctcccttttcctccattttcaatcgtaacccaatcct-aaaccaccaccgtgaaacccaaagtcagaccccaaaccaccgtgaaacacca |
11362434 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 121 - 213
Target Start/End: Complemental strand, 21905545 - 21905454
Alignment:
| Q |
121 |
cgttctcccttttcctccattctcaatcaaaacccaatccccaaaccaccaccgtgaaaccaaaactcagaccccaaaccaccgtgaaacacc |
213 |
Q |
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|||||||| ||||| |||||| |||||| ||||||||||| ||||||||||||||||||| ||| ||||||||||||||||||||||||||| |
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| T |
21905545 |
cgttctcctttttcgtccattttcaatcgcaacccaatccc-aaaccaccaccgtgaaacccaaattcagaccccaaaccaccgtgaaacacc |
21905454 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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