View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2977_high_17 (Length: 250)
Name: NF2977_high_17
Description: NF2977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2977_high_17 |
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Alignment Details
Target: chr8 (Bit Score: 178; Significance: 4e-96; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 20 - 201
Target Start/End: Complemental strand, 34928883 - 34928702
Alignment:
| Q |
20 |
tgttaaccactactgagcttgtcgggaaactttgcagttcgatctctactaaacacattcatggtgacgagttttaagctaagaccgaaaacacctaagc |
119 |
Q |
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| T |
34928883 |
tgttaaccactactgagcttgtcggggaactttgcagttcgatctctactaaacacattcatggtgacgagttttaagctaagaccgaaaacacctaagc |
34928784 |
T |
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| Q |
120 |
agagattagtctcattatcagtctaatggactgaagctagtggaaatattatgtgtagcaaatggggtgccaaaggtcctaa |
201 |
Q |
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| T |
34928783 |
agagattagtctcattatcagtctaatggactgaagctagtggaaatattatgtgtagcaaatggggtgccaaaggtcctaa |
34928702 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 110 - 213
Target Start/End: Original strand, 5713118 - 5713221
Alignment:
| Q |
110 |
acacctaagcagagattagtctcattatcagtctaatggactgaagctagtggaaatattatgtgtagcaaatggggtgccaaaggtcctaattacgtgg |
209 |
Q |
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| T |
5713118 |
acacctaggcagagattagtctagttatcagtccaaaagactgaagctagtggaaagactatgtgtagccaatggggtgtcaaaggtcctaattacgtgc |
5713217 |
T |
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| Q |
210 |
cttc |
213 |
Q |
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|||| |
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| T |
5713218 |
cttc |
5713221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 54 - 141
Target Start/End: Complemental strand, 34932969 - 34932882
Alignment:
| Q |
54 |
cagttcgatctctactaaacacattcatggtgacgagttttaagctaagaccgaaaacacctaagcagagattagtctcattatcagt |
141 |
Q |
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| T |
34932969 |
cagttcgatccccacaaaacacatccatggtgaagagttttaagctaagatctaaaacacctatgcagagattagtctcattatcagt |
34932882 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 165 - 217
Target Start/End: Complemental strand, 34932879 - 34932827
Alignment:
| Q |
165 |
atattatgtgtagcaaatggggtgccaaaggtcctaattacgtggcttccaac |
217 |
Q |
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| T |
34932879 |
atattatgtgtagcttttggggtgccaaaggtcctaattacatggcctccaac |
34932827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 110 - 213
Target Start/End: Complemental strand, 2882267 - 2882164
Alignment:
| Q |
110 |
acacctaagcagagattagtctcattatcagtctaatggactgaagctagtggaaatattatgtgtagcaaatggggtgccaaaggtcctaattacgtgg |
209 |
Q |
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| T |
2882267 |
acacctaggcagagattagtctagttatcagtccaaaagactgaagctagtggaaagactatgtgtagccaatggggtgccaaaggtcctaattacgtgc |
2882168 |
T |
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| Q |
210 |
cttc |
213 |
Q |
| |
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|||| |
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| T |
2882167 |
cttc |
2882164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 110 - 213
Target Start/End: Original strand, 16189781 - 16189884
Alignment:
| Q |
110 |
acacctaagcagagattagtctcattatcagtctaatggactgaagctagtggaaatattatgtgtagcaaatggggtgccaaaggtcctaattacgtgg |
209 |
Q |
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| T |
16189781 |
acacctaggcagagattagtctagttatcagtccaaaagactgaagctagtggaaagactatgtgtagccaatggggtgccaaaggtcctaattacgtgc |
16189880 |
T |
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| Q |
210 |
cttc |
213 |
Q |
| |
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|||| |
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| T |
16189881 |
cttc |
16189884 |
T |
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