View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2977_high_3 (Length: 523)
Name: NF2977_high_3
Description: NF2977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2977_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 357; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 76 - 507
Target Start/End: Original strand, 11646601 - 11647028
Alignment:
| Q |
76 |
tatctcacatgttaaaaatcaaaatgattgctaacccgtaaatattatgctaaaaacaccataacgtagactaaacaagagaaaaaccaaatatatatct |
175 |
Q |
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| T |
11646601 |
tatctcacatgttaa---tcaaaatgattgctaactcgtaaatattatgctaaaaacaccataacgta-----aacaagagaaaaaccaaatatatatct |
11646692 |
T |
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| Q |
176 |
atatatggtacctatagcatcgccaacctataatagatgaattatggtccaactttactctagaaaaatattaatataacaactaatatattaatatttg |
275 |
Q |
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| T |
11646693 |
atatatggtacctatagcatcgccaacctataatagataaattatggtccaactttactctagaaaaatattaatataacaactaatatattaatatttg |
11646792 |
T |
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| Q |
276 |
cctataataagaaaattaatcaacaaagacataatatgtggtgggtatgtgttagtttgtatttttaagtgtgtgattcgacaagaaaattggttatcaa |
375 |
Q |
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| T |
11646793 |
cctataataagaaaattaatcaacaaagacataatatgtggtgggtatgtgttagtttgtatttttaagcgtgtgattcgacaagaaaattggttatcaa |
11646892 |
T |
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| Q |
376 |
gacc----atgaaattctctaattgcgggatggagaataaagatttcgacaggagtggttcgactagttctttaattcgactagaagaattcaaatcttt |
471 |
Q |
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| T |
11646893 |
gaccatgaatgaaattctctaattgcgggatggagaataaagatttcgacaggagtggttcgactagttctttaattcgactagaggaattcaaatcatt |
11646992 |
T |
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| Q |
472 |
ggcaaagaagcaagattaagagtccagacacgtgga |
507 |
Q |
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| T |
11646993 |
gctaaagaagcaagattaagagtccagacacgtgga |
11647028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 18 - 77
Target Start/End: Original strand, 11646268 - 11646326
Alignment:
| Q |
18 |
tgtgcagatgtttgatgacgtgtttgcaatttctatacgctttaaaaactataaacaata |
77 |
Q |
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| T |
11646268 |
tgtgcagatgtttgatgacgtgtttgcaatttcaatacg-tttaaaaactataaacaata |
11646326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 325 - 386
Target Start/End: Original strand, 14628471 - 14628531
Alignment:
| Q |
325 |
tgttagtttgtatttttaagtgtgtgattcgacaagaaaattggttatcaagaccatgaaat |
386 |
Q |
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| T |
14628471 |
tgttagtctgtatttt-aagtgtgtgtttcgacaagaaaattggttattaagatcatgaaat |
14628531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 362 - 394
Target Start/End: Original strand, 5062194 - 5062226
Alignment:
| Q |
362 |
aaattggttatcaagaccatgaaattctctaat |
394 |
Q |
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| T |
5062194 |
aaattggttatcaagaccatgaaattctttaat |
5062226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 239 - 275
Target Start/End: Original strand, 2057035 - 2057071
Alignment:
| Q |
239 |
aaaaatattaatataacaactaatatattaatatttg |
275 |
Q |
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| T |
2057035 |
aaaaatactaatataacaactaatatattaacatttg |
2057071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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