View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2977_low_12 (Length: 269)
Name: NF2977_low_12
Description: NF2977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2977_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 224; Significance: 1e-123; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 31734764 - 31734995
Alignment:
| Q |
1 |
aaagacttttgccaaatcattcccacaaatggagtgcattgtatttgatcttccacatgttgttgatggtttgcaaggaagtgagaatctaagctatgtt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31734764 |
aaagacttttgccaaatcattcccacaaatggagtgcattgtgtttgatctaccacatgttgttgatggtttgcaaggaagtgagaatctaagctatgtt |
31734863 |
T |
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| Q |
101 |
ggtggagacatgtttaaagaaattccgccaaccgatgcaattctgttgaaggtaaagtattaagataagtactccatagaaaatactctaatgttaagaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31734864 |
ggtggagacatgtttaaagaaattccgccaaccgatgcaattctgttgaaggtaaagtattaagataagtactccatagaaaatactctaatgttaagaa |
31734963 |
T |
|
| Q |
201 |
tatgtttgtgtttaagccatgttatcaccaga |
232 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
31734964 |
tatgtttgtgtttaagccatgttatcaccaga |
31734995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 9 - 155
Target Start/End: Original strand, 31684393 - 31684539
Alignment:
| Q |
9 |
ttgccaaatcattcccacaaatggagtgcattgtatttgatcttccacatgttgttgatggtttgcaaggaagtgagaatctaagctatgttggtggaga |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || ||| ||||||||||||||| |
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| T |
31684393 |
ttgccaaatcattcccacaaatggagtgcattgtatttgatcttccacatgttgttgatggtttgctaggaagtgaaaacttaaactatgttggtggaga |
31684492 |
T |
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| Q |
109 |
catgtttaaagaaattccgccaaccgatgcaattctgttgaaggtaa |
155 |
Q |
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| T |
31684493 |
catgtttaaagaaattccgccaacagctgcaattttgttgaaggtaa |
31684539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 1 - 156
Target Start/End: Original strand, 31711358 - 31711513
Alignment:
| Q |
1 |
aaagacttttgccaaatcattcccacaaatggagtgcattgtatttgatcttccacatgttgttgatggtttgcaaggaagtgagaatctaagctatgtt |
100 |
Q |
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||||||| ||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| || ||||| |||||| |
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| T |
31711358 |
aaagactcttgtcaaatcattcccacaaatggagtgcattgtgtttgatcttccacatgttgttgatggcttgcaaggaagtgaaaagctaagatatgtt |
31711457 |
T |
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| Q |
101 |
ggtggagacatgtttaaagaaattccgccaaccgatgcaattctgttgaaggtaaa |
156 |
Q |
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||||||||||||||||| |||||||| ||| | ||||||||| ||||||||||||| |
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| T |
31711458 |
ggtggagacatgtttaaggaaattccaccagcagatgcaattttgttgaaggtaaa |
31711513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 9 - 156
Target Start/End: Original strand, 31702932 - 31703079
Alignment:
| Q |
9 |
ttgccaaatcattcccacaaatggagtgcattgtatttgatcttccacatgttgttgatggtttgcaaggaagtgagaatctaagctatgttggtggaga |
108 |
Q |
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|||| |||||||||||||||||||||| | |||||||||||| ||||||||||||||||| |||||||| ||||||||||||| ||||||||||||||| |
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| T |
31702932 |
ttgctaaatcattcccacaaatggagtttagtgtatttgatctaccacatgttgttgatggcttgcaaggtagtgagaatctaaactatgttggtggaga |
31703031 |
T |
|
| Q |
109 |
catgtttaaagaaattccgccaaccgatgcaattctgttgaaggtaaa |
156 |
Q |
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|||||||||||||||||| ||||| || || ||| ||||||||||||| |
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| T |
31703032 |
catgtttaaagaaattcctccaacagacgccattttgttgaaggtaaa |
31703079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 9 - 158
Target Start/End: Original strand, 31714335 - 31714484
Alignment:
| Q |
9 |
ttgccaaatcattcccacaaatggagtgcattgtatttgatcttccacatgttgttgatggtttgcaaggaagtgagaatctaagctatgttggtggaga |
108 |
Q |
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|||||||||||||||||||| | ||||||| ||| |||||||||||||||||||||||||| ||||||||| |||| || ||| ||||||||||||||| |
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| T |
31714335 |
ttgccaaatcattcccacaattagagtgcactgtgtttgatcttccacatgttgttgatggcttgcaaggaggtgataacttaaactatgttggtggaga |
31714434 |
T |
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| Q |
109 |
catgtttaaagaaattccgccaaccgatgcaattctgttgaaggtaaagt |
158 |
Q |
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|||||||| |||||| ||| | ||||| ||| ||||||||||||||| |
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| T |
31714435 |
tatgtttaagagaattcctccagctgatgctattttgttgaaggtaaagt |
31714484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 17 - 115
Target Start/End: Original strand, 30570360 - 30570458
Alignment:
| Q |
17 |
tcattcccacaaatggagtgcattgtatttgatcttccacatgttgttgatggtttgcaaggaagtgagaatctaagctatgttggtggagacatgttt |
115 |
Q |
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||||||||| | || |||||||||||||||||||||||||||||||||||||| || ||||||||||| || ||| |||||||| || ||||||||| |
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| T |
30570360 |
tcattcccaaacattgagtgcattgtatttgatcttccacatgttgttgatggcttacaaggaagtgaaaacttaaaatatgttggaggtgacatgttt |
30570458 |
T |
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