View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2977_low_14 (Length: 257)
Name: NF2977_low_14
Description: NF2977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2977_low_14 |
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| [»] scaffold0172 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 132; Significance: 1e-68; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 53415358 - 53415497
Alignment:
| Q |
1 |
tttaacgtgcacaaactgttgtgtattttcctggttttctaagtagcattgatgtgtcttttccataacaggttgcaatcatttgtaatcatcagtgtag |
100 |
Q |
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|||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53415358 |
tttaacgtgcacaaactgttctatattttcctggttttctaagtagcattgatgtgtcttttccataacaggttgcaatcatttgtaatcatcagtgtag |
53415457 |
T |
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| Q |
101 |
tgtttcaaaaattcacagtgaacaaatttcaaagttgaat |
140 |
Q |
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| T |
53415458 |
tgtttcaaaaattcacagtgaacaaatttcaaagttgaat |
53415497 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 8 - 139
Target Start/End: Original strand, 53318138 - 53318269
Alignment:
| Q |
8 |
tgcacaaactgttgtgtattttcctggttttctaagtagcattgatgtgtcttttccataacaggttgcaatcatttgtaatcatcagtgtagtgtttca |
107 |
Q |
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| T |
53318138 |
tgcacagattgttgtgtgttttcctgattttctaagtagcattgatgtgtcttttgcataacaggttgcaatcatttgtaatcatcaacgtagtgtttca |
53318237 |
T |
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| Q |
108 |
aaaattcacagtgaacaaatttcaaagttgaa |
139 |
Q |
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| T |
53318238 |
aaatctcacagtgaacaaatttcgaagttgaa |
53318269 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 19 - 136
Target Start/End: Original strand, 53411648 - 53411764
Alignment:
| Q |
19 |
ttgtgtattttcctggttttctaagtagcattgatgtgtcttttccataacaggttgcaatcatttgtaatcatcagtgtagtgtttcaaaaattcacag |
118 |
Q |
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| T |
53411648 |
ttgtgtattttcctggttttctaagttgcattgatgtgtcttttc-ataacaggttgcaatcatttgtaatcatcaacgcagtgtttcaaaaaatcacag |
53411746 |
T |
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| Q |
119 |
tgaacaaatttcaaagtt |
136 |
Q |
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| T |
53411747 |
tgcacaaatttcaaagtt |
53411764 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 157 - 239
Target Start/End: Original strand, 53415485 - 53415567
Alignment:
| Q |
157 |
ttcaaagttgaatgaaaagattgatgaacttcaggcgataatactctttagaatttggaagccttggtgtgaatgaatttctt |
239 |
Q |
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| T |
53415485 |
ttcaaagttgaatgaaaagattgatgaacttcaggcgataatactctttagaatttggaagccttggtgtgaatgaatttctt |
53415567 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 19 - 133
Target Start/End: Complemental strand, 53367162 - 53367049
Alignment:
| Q |
19 |
ttgtgtattttcctggttttctaagtagcattgatgtgtcttttccataacaggttgcaatcatttgtaatcatcagtgtagtgtttcaaaaattcacag |
118 |
Q |
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| T |
53367162 |
ttgtgtattttcctggttttcaaagtttcattgatgtgtcttttc-ataacagggtgcaatcatttgtaatcatcaacgcagtgtttcaaaaaatcacag |
53367064 |
T |
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| Q |
119 |
tgaacaaatttcaaa |
133 |
Q |
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| T |
53367063 |
tgcacaaatttcaaa |
53367049 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 157 - 239
Target Start/End: Complemental strand, 53367054 - 53366972
Alignment:
| Q |
157 |
ttcaaagttgaatgaaaagattgatgaacttcaggcgataatactctttagaatttggaagccttggtgtgaatgaatttctt |
239 |
Q |
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| T |
53367054 |
ttcaaaattaaatgaaaagattgttgaacttcaggtgataatactatttagaatttggaaaccttggtgtaaatgaatttctt |
53366972 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 157 - 238
Target Start/End: Original strand, 53411756 - 53411837
Alignment:
| Q |
157 |
ttcaaagttgaatgaaaagattgatgaacttcaggcgataatactctttagaatttggaagccttggtgtgaatgaatttct |
238 |
Q |
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| T |
53411756 |
ttcaaagttaaatgaaaagattgttgaacttcaggtgataatactatttagagtttggaaaccttggtgtaaatgaatttct |
53411837 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 2 - 140
Target Start/End: Original strand, 14922787 - 14922925
Alignment:
| Q |
2 |
ttaacgtgcacaaactgttgtgtattttcctggttttctaagtagcattgatgtgtcttttccataacaggttgcaatcatttgtaatcatcagtgtagt |
101 |
Q |
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| T |
14922787 |
ttaatgtgcacagattgttgtgtattttactggtttgctaagttgcatcgacgtgtcttttccataacaggttgcaatcatttgtaatcatcaacgtgct |
14922886 |
T |
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| Q |
102 |
gtttcaaaaattcacagtgaacaaatttcaaagttgaat |
140 |
Q |
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| T |
14922887 |
gtttcgaaatctcacggcacacaaatttcaaagttgaat |
14922925 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 157 - 243
Target Start/End: Original strand, 14922913 - 14922999
Alignment:
| Q |
157 |
ttcaaagttgaatgaaaagattgatgaacttcaggcgataatactctttagaatttggaagccttggtgtgaatgaatttcttctca |
243 |
Q |
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||||||||||||||||||||||||||||||| ||| ||||||| |||||||||||||||| || ||||||| || ||||||| |||| |
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| T |
14922913 |
ttcaaagttgaatgaaaagattgatgaacttaaggtgataatattctttagaatttggaaaccatggtgtggatcaatttctcctca |
14922999 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0172 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0172
Description:
Target: scaffold0172; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 66 - 127
Target Start/End: Complemental strand, 3065 - 3004
Alignment:
| Q |
66 |
taacaggttgcaatcatttgtaatcatcagtgtagtgtttcaaaaattcacagtgaacaaat |
127 |
Q |
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| T |
3065 |
taacaggttgcaattatctgtaatcatcaacggagtgtttcaaaatctcacagtcaacaaat |
3004 |
T |
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