View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2977_low_18 (Length: 247)
Name: NF2977_low_18
Description: NF2977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2977_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 107; Significance: 9e-54; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 18 - 164
Target Start/End: Complemental strand, 33358301 - 33358153
Alignment:
| Q |
18 |
ctaatgaagttggagattgctgaaaaacctccatcaattgcttaaaattccagttacacttttaagaag--nnnnnnnnngtctattgaaatttaagttc |
115 |
Q |
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| T |
33358301 |
ctaatgaagttggagattgctgaaaaacctccatcaattgcttaaaattccagttacacttttaagaagaaaaaaaaaaagtctattgaaatttaagttc |
33358202 |
T |
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| Q |
116 |
caataagtttggaaaatcaccaaagaagtttggacaatgctatcaattt |
164 |
Q |
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| T |
33358201 |
caataagtttggacaatcaccaaagaagtttggacaatgctatcaattt |
33358153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 206 - 237
Target Start/End: Complemental strand, 33358141 - 33358110
Alignment:
| Q |
206 |
caatttaatatgtctgggatggataactcatt |
237 |
Q |
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| T |
33358141 |
caatttaatatgtctgggatggataactcatt |
33358110 |
T |
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