View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2977_low_19 (Length: 246)

Name: NF2977_low_19
Description: NF2977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2977_low_19
NF2977_low_19
[»] chr4 (5 HSPs)
chr4 (1-229)||(32191913-32192141)
chr4 (163-229)||(50300896-50300962)
chr4 (163-229)||(29696054-29696120)
chr4 (163-215)||(5576127-5576179)
chr4 (163-219)||(53298618-53298674)
[»] chr7 (2 HSPs)
chr7 (163-229)||(33055067-33055133)
chr7 (163-227)||(45224335-45224399)
[»] scaffold0392 (1 HSPs)
scaffold0392 (163-228)||(478-543)
[»] chr2 (2 HSPs)
chr2 (163-229)||(6192269-6192335)
chr2 (171-214)||(31642103-31642146)
[»] chr6 (1 HSPs)
chr6 (162-211)||(14590741-14590790)
[»] chr5 (1 HSPs)
chr5 (171-229)||(41697773-41697831)


Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 32191913 - 32192141
Alignment:
Q  1 ccaattcatcccatagatttacaaatctccactaagagaagaatctaataacataattaagttcaatagtacaatcaccgactcaacatagaaactaaaa 100  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32191913 ccaattcatcccatagatttacgaatctccactaagagaagaatctaataacataattaagttcaatagtacaatcaccgactcaacatagaaactaaaa 32192012  T
Q  101 tagcttatttgtaatcagtccataaaacagacttcttttcattgcccattccttaggtacgattgtttcgaaggaaagatagtggggaggagagaaagtt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| ||||||||||    
T  32192013 tagcttatttgtaatcagtccataaaacagacttcttttcattgcccattccttaggtacgtttgtttcaaaggaaagatagtggggagaagagaaagtt 32192112  T
Q  201 gaaggaaagaaacatcttcctttgtttgg 229  Q
    |||||||||||||||||||||||||||||    
T  32192113 gaaggaaagaaacatcttcctttgtttgg 32192141  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 163 - 229
Target Start/End: Original strand, 50300896 - 50300962
Alignment:
Q  163 ttgtttcgaaggaaagatagtggggaggagagaaagttgaaggaaagaaacatcttcctttgtttgg 229  Q
    ||||||| ||||||||||||||| |||||||||||| ||| |||||||||||  ||| |||||||||    
T  50300896 ttgtttctaaggaaagatagtggagaggagagaaagatgagggaaagaaacactttcttttgtttgg 50300962  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 163 - 229
Target Start/End: Original strand, 29696054 - 29696120
Alignment:
Q  163 ttgtttcgaaggaaagatagtggggaggagagaaagttgaaggaaagaaacatcttcctttgtttgg 229  Q
    ||||||| ||||||||||||||| || ||||||||| ||| |||||||||||  ||| |||||||||    
T  29696054 ttgtttctaaggaaagatagtggagacgagagaaagatgagggaaagaaacactttcttttgtttgg 29696120  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 215
Target Start/End: Complemental strand, 5576179 - 5576127
Alignment:
Q  163 ttgtttcgaaggaaagatagtggggaggagagaaagttgaaggaaagaaacat 215  Q
    ||||||| ||| |||||| ||||||||||||||||| ||| |||| |||||||    
T  5576179 ttgtttccaagaaaagattgtggggaggagagaaagctgagggaaggaaacat 5576127  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 219
Target Start/End: Complemental strand, 53298674 - 53298618
Alignment:
Q  163 ttgtttcgaaggaaagatagtggggaggagagaaagttgaaggaaagaaacatcttc 219  Q
    ||||||| ||| ||||||| ||||||||||||||| |||| ||||| || |||||||    
T  53298674 ttgtttctaagaaaagataatggggaggagagaaacttgagggaaaaaagcatcttc 53298618  T

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Target: chr7 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 163 - 229
Target Start/End: Original strand, 33055067 - 33055133
Alignment:
Q  163 ttgtttcgaaggaaagatagtggggaggagagaaagttgaaggaaagaaacatcttcctttgtttgg 229  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||  ||||||| ||||||||    
T  33055067 ttgtttctaaggaaagatagtggggaggagagaaagttgaaggaaagaagtatcttcccttgtttgg 33055133  T

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Target: chr7; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 163 - 227
Target Start/End: Complemental strand, 45224399 - 45224335
Alignment:
Q  163 ttgtttcgaaggaaagatagtggggaggagagaaagttgaaggaaagaaacatcttcctttgttt 227  Q
    ||||||| |||||||||||||||||||||||||||||||| |||||||| |||||||| ||||||    
T  45224399 ttgtttctaaggaaagatagtggggaggagagaaagttgagggaaagaagcatcttcccttgttt 45224335  T

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Target: scaffold0392 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0392
Description:

Target: scaffold0392; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 163 - 228
Target Start/End: Original strand, 478 - 543
Alignment:
Q  163 ttgtttcgaaggaaagatagtggggaggagagaaagttgaaggaaagaaacatcttcctttgtttg 228  Q
    ||||||| ||||| |||||||||||||||||||||||||||||||||||  ||||||| |||||||    
T  478 ttgtttctaaggatagatagtggggaggagagaaagttgaaggaaagaagtatcttcccttgtttg 543  T

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Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 163 - 229
Target Start/End: Complemental strand, 6192335 - 6192269
Alignment:
Q  163 ttgtttcgaaggaaagatagtggggaggagagaaagttgaaggaaagaaacatcttcctttgtttgg 229  Q
    ||||||| |||||||||||||||| |||| |||||||||| ||||||||| || |||  ||||||||    
T  6192335 ttgtttctaaggaaagatagtgggtaggaaagaaagttgagggaaagaaatattttctattgtttgg 6192269  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 171 - 214
Target Start/End: Original strand, 31642103 - 31642146
Alignment:
Q  171 aaggaaagatagtggggaggagagaaagttgaaggaaagaaaca 214  Q
    ||||||||| ||||  ||||||||||||||||||||||||||||    
T  31642103 aaggaaagaaagtgaagaggagagaaagttgaaggaaagaaaca 31642146  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 162 - 211
Target Start/End: Original strand, 14590741 - 14590790
Alignment:
Q  162 attgtttcgaaggaaagatagtggggaggagagaaagttgaaggaaagaa 211  Q
    |||||||| ||||||||||||||| |||||||||||| ||| ||||||||    
T  14590741 attgtttctaaggaaagatagtggagaggagagaaagatgagggaaagaa 14590790  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 229
Target Start/End: Complemental strand, 41697831 - 41697773
Alignment:
Q  171 aaggaaagatagtggggaggagagaaagttgaaggaaagaaacatcttcctttgtttgg 229  Q
    ||||||||| ||||  |||||||||||||||| |||||||||||  |||| ||||||||    
T  41697831 aaggaaagaaagtgaagaggagagaaagttgagggaaagaaacactttccattgtttgg 41697773  T

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