View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2977_low_2 (Length: 637)
Name: NF2977_low_2
Description: NF2977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2977_low_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 597; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 597; E-Value: 0
Query Start/End: Original strand, 18 - 626
Target Start/End: Original strand, 52988724 - 52989332
Alignment:
| Q |
18 |
atgatgatgatgatgagaggagccgtcgtttgtgtcgccacatccatttttgtggacatgatgttgatttgacgatttacaactttttcctccatgcttg |
117 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52988724 |
atgatcatgatgatgagaggagccgtcgtttgtgtcgccacatccatttttgtggacatgatgttgatttgacgatttacaactttttcctccatgcttg |
52988823 |
T |
|
| Q |
118 |
tgccctcttggcagaagtaacatgctgtttaaaatgaccaacagacatgttccaacgtcagcaagaactgctgcccacacaattgggtgaccagcaatgg |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52988824 |
tgccctcttggcagaagtaacatgctgtttaaaatgaccaacagacatgttccaacgtcagcaagaactgctgcccacacaattgggtgaccagcaatgg |
52988923 |
T |
|
| Q |
218 |
ctaaagcaagaatggcaaccttagtgatgactgacaatacaatgttctctatcactttccttcgtgcttttcttgcaagcttaatggcttctggtatctt |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52988924 |
ctaaagcaagaatggcaaccttagtgatgactgacaatacaatgttctctatcactttccttcgtgcttttcttgcaagcttaatggcttctggtatctt |
52989023 |
T |
|
| Q |
318 |
cctaaggtcgttcgacataagaattatgttgccggtttcacttgcaagtgcagaacctgaaatgcccatcgagattccaatatcagctgaagctaatgcg |
417 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52989024 |
cctaaggtcgttcgacataagaattatgtcgccggtttcacttgcaagtgcagaacctgaaatgcccatcgagattccaatatcagctgaagctaatgcg |
52989123 |
T |
|
| Q |
418 |
ggtgcatcatttaaaccatctcccagcatggccgttgggccgtcctttttaaattctgtgatgatttttaccttgccctctggcaaaagttccgcatgga |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52989124 |
ggtgcatcatttaaaccatctcccagcatggccgttgggccgtcctttttaaattctgtgatgatttttaccttgccctctggcaaaagttccgcatgga |
52989223 |
T |
|
| Q |
518 |
ccaactccagggcatgacctagctgtaaatgaaatcagtcttgccgttagtatttaactcgtccatgataagtaaatcttaaacctagaccttattcaga |
617 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
52989224 |
ccaactccagggcatgacctagctgtaaatgaaatcagtcttgccgttagtatttaactcgtccatgaaaagtaaatcttaaacctagaccttattcaga |
52989323 |
T |
|
| Q |
618 |
tatcttcat |
626 |
Q |
| |
|
||||||||| |
|
|
| T |
52989324 |
tatcttcat |
52989332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University