View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2977_low_20 (Length: 246)
Name: NF2977_low_20
Description: NF2977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2977_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 32191854 - 32191619
Alignment:
| Q |
1 |
ttatctaataaacactttaatttggtaatcaaataaaataaaaacccagaaattggtagtggagctccctcctgctttcatagttattgtctatgaaact |
100 |
Q |
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| T |
32191854 |
ttatctaataaacactttaatttggtaatcaaataaaataaaaacccagaaattggtagtggagctccctcctgctttcgtagttattgtctatgaaacc |
32191755 |
T |
|
| Q |
101 |
cagatacaaacatacgatacagacactacgctggtactgttaataatttgagaaaacataaaattatgtgtaattatgagtcggtgtcggacagcggaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32191754 |
cagatacaaacatacgatacagacactacgctggtactgttaataatttgagaaaacataaaattatgtgtaattatgagtcggtgtcggacagcggaat |
32191655 |
T |
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| Q |
201 |
ccgtataactccaagagtgtcaatgcttcacaggtt |
236 |
Q |
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|||||||||||||||||||||||||||||| ||||| |
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| T |
32191654 |
ccgtataactccaagagtgtcaatgcttcataggtt |
32191619 |
T |
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