View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2977_low_22 (Length: 241)

Name: NF2977_low_22
Description: NF2977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2977_low_22
NF2977_low_22
[»] chr4 (13 HSPs)
chr4 (11-223)||(17970121-17970333)
chr4 (11-66)||(27444900-27444955)
chr4 (11-66)||(27526218-27526273)
chr4 (11-61)||(27469444-27469494)
chr4 (11-61)||(27486967-27487017)
chr4 (11-64)||(27505808-27505861)
chr4 (16-63)||(27507924-27507971)
chr4 (11-66)||(27554288-27554343)
chr4 (11-61)||(27476671-27476721)
chr4 (11-61)||(27523509-27523559)
chr4 (26-64)||(27566072-27566110)
chr4 (11-64)||(27513882-27513935)
chr4 (26-66)||(27570170-27570210)
[»] chr2 (1 HSPs)
chr2 (11-223)||(3073391-3073603)
[»] chr3 (11 HSPs)
chr3 (11-146)||(38043802-38043937)
chr3 (11-146)||(50904898-50905033)
chr3 (18-146)||(38028879-38029004)
chr3 (16-141)||(38036904-38037026)
chr3 (18-146)||(38040194-38040319)
chr3 (16-141)||(38033890-38034012)
chr3 (23-146)||(50909862-50909982)
chr3 (18-76)||(48840824-48840882)
chr3 (11-133)||(55084698-55084820)
chr3 (46-137)||(48838793-48838884)
chr3 (11-67)||(50911975-50912031)
[»] chr8 (2 HSPs)
chr8 (18-146)||(21604867-21604992)
chr8 (16-67)||(21607407-21607458)


Alignment Details
Target: chr4 (Bit Score: 165; Significance: 2e-88; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 11 - 223
Target Start/End: Complemental strand, 17970333 - 17970121
Alignment:
Q  11 cacagaccgcttcattttctctccaacgtacaccgcaagatatccctttggcacatttgctactttcaatgacgtttggctgctgctaaatgtcgccctt 110  Q
    |||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  17970333 cacaaaccgcttcatttcctctccaacgtacaccgcaagatatccctttggcacatttgctactttcaatgacgtttggctgctgctaaatgtcaccctt 17970234  T
Q  111 cttatagctgcaggtaaacggaagcccattttaaattaaatgcgtcaaagaagaagctaaagctctcgattaagnnnnnnnntatttatcttctgattat 210  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||        |||||||||| |||||||    
T  17970233 cttatagctgcaggtaaacggaagcccattctaaattaaatgcgtcaaagaacaagctaaagctctcgattaagaaaaaaaatatttatcttttgattat 17970134  T
Q  211 cgagtatgtgaat 223  Q
    |||||||||||||    
T  17970133 cgagtatgtgaat 17970121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 66
Target Start/End: Original strand, 27444900 - 27444955
Alignment:
Q  11 cacagaccgcttcattttctctccaacgtacaccgcaagatatccctttggcacat 66  Q
    |||| ||| |||||||| |||||||||||| || ||||||||||||||||||||||    
T  27444900 cacaaacctcttcatttcctctccaacgtatactgcaagatatccctttggcacat 27444955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 66
Target Start/End: Original strand, 27526218 - 27526273
Alignment:
Q  11 cacagaccgcttcattttctctccaacgtacaccgcaagatatccctttggcacat 66  Q
    |||| |||||||||||||||||||||| ||||| || |||||||||||||| ||||    
T  27526218 cacaaaccgcttcattttctctccaacatacactgctagatatccctttggaacat 27526273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 11 - 61
Target Start/End: Complemental strand, 27469494 - 27469444
Alignment:
Q  11 cacagaccgcttcattttctctccaacgtacaccgcaagatatccctttgg 61  Q
    |||| ||||||||||||||||||| |||||||| || ||||||||||||||    
T  27469494 cacaaaccgcttcattttctctcctacgtacactgctagatatccctttgg 27469444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 11 - 61
Target Start/End: Complemental strand, 27487017 - 27486967
Alignment:
Q  11 cacagaccgcttcattttctctccaacgtacaccgcaagatatccctttgg 61  Q
    |||| ||||||||||||||||||| |||||||| || ||||||||||||||    
T  27487017 cacaaaccgcttcattttctctcctacgtacactgctagatatccctttgg 27486967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 11 - 64
Target Start/End: Original strand, 27505808 - 27505861
Alignment:
Q  11 cacagaccgcttcattttctctccaacgtacaccgcaagatatccctttggcac 64  Q
    |||| ||||||||||||||||||| |||||||| || ||||| |||||||||||    
T  27505808 cacaaaccgcttcattttctctcctacgtacactgctagatacccctttggcac 27505861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 63
Target Start/End: Original strand, 27507924 - 27507971
Alignment:
Q  16 accgcttcattttctctccaacgtacaccgcaagatatccctttggca 63  Q
    |||||||||||||  |||| |||||||||||||| |||||||||||||    
T  27507924 accgcttcatttttactcctacgtacaccgcaaggtatccctttggca 27507971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 66
Target Start/End: Complemental strand, 27554343 - 27554288
Alignment:
Q  11 cacagaccgcttcattttctctccaacgtacaccgcaagatatccctttggcacat 66  Q
    |||| |||||||||||| ||||||||| || || ||||| ||||||||||||||||    
T  27554343 cacaaaccgcttcatttcctctccaacatatactgcaaggtatccctttggcacat 27554288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 61
Target Start/End: Complemental strand, 27476721 - 27476671
Alignment:
Q  11 cacagaccgcttcattttctctccaacgtacaccgcaagatatccctttgg 61  Q
    |||| |||||||||||||||| ||||| ||||| || ||||||||||||||    
T  27476721 cacaaaccgcttcattttctcaccaacatacactgctagatatccctttgg 27476671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 61
Target Start/End: Original strand, 27523509 - 27523559
Alignment:
Q  11 cacagaccgcttcattttctctccaacgtacaccgcaagatatccctttgg 61  Q
    |||| ||||||||||||||||||| |||||||| || ||||| ||||||||    
T  27523509 cacaaaccgcttcattttctctcctacgtacactgctagatagccctttgg 27523559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 64
Target Start/End: Original strand, 27566072 - 27566110
Alignment:
Q  26 tttctctccaacgtacaccgcaagatatccctttggcac 64  Q
    |||||||||||| ||||| ||||||||||||||||||||    
T  27566072 tttctctccaacatacactgcaagatatccctttggcac 27566110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 64
Target Start/End: Original strand, 27513882 - 27513935
Alignment:
Q  11 cacagaccgcttcattttctctccaacgtacaccgcaagatatccctttggcac 64  Q
    |||| ||||||||||||||||||| || ||||| || |||||||| ||||||||    
T  27513882 cacaaaccgcttcattttctctcctacatacactgctagatatccttttggcac 27513935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 66
Target Start/End: Original strand, 27570170 - 27570210
Alignment:
Q  26 tttctctccaacgtacaccgcaagatatccctttggcacat 66  Q
    |||||||||||| || || ||||||||||||||||||||||    
T  27570170 tttctctccaacatatactgcaagatatccctttggcacat 27570210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 11 - 223
Target Start/End: Complemental strand, 3073603 - 3073391
Alignment:
Q  11 cacagaccgcttcattttctctccaacgtacaccgcaagatatccctttggcacatttgctactttcaatgacgtttggctgctgctaaatgtcgccctt 110  Q
    |||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  3073603 cacaaaccgcttcatttcctctccaacgtacaccgcaagatatccctttggcacatttgctactttcaatgacgtttggctgctgctaaatgtcaccctt 3073504  T
Q  111 cttatagctgcaggtaaacggaagcccattttaaattaaatgcgtcaaagaagaagctaaagctctcgattaagnnnnnnnntatttatcttctgattat 210  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||        |||||||||| |||||||    
T  3073503 cttatagctgcaggtaaacggaagcccattctaaattaaatgcgtcaaagaacaagctaaagctctcgattaagaaaaaaaatatttatcttttgattat 3073404  T
Q  211 cgagtatgtgaat 223  Q
    |||||||||||||    
T  3073403 cgagtatgtgaat 3073391  T

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Target: chr3 (Bit Score: 76; Significance: 3e-35; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 11 - 146
Target Start/End: Complemental strand, 38043937 - 38043802
Alignment:
Q  11 cacagaccgcttcattttctctccaacgtacaccgcaagatatccctttggcacatttgctactttcaatgacgtttggctgctgctaaatgtcgccctt 110  Q
    |||| |||||||||||| |||||||| |||||| |||||||| | ||||||||||||||  ||||||||||| ||||||||||| |||||||  ||||||    
T  38043937 cacaaaccgcttcatttcctctccaaagtacactgcaagatagctctttggcacatttgtgactttcaatgatgtttggctgcttctaaatgaagccctt 38043838  T
Q  111 cttatagctgcaggtaaacggaagcccattttaaat 146  Q
      |||||||||||||||| |||||||||||||||||    
T  38043837 actatagctgcaggtaaatggaagcccattttaaat 38043802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 11 - 146
Target Start/End: Original strand, 50904898 - 50905033
Alignment:
Q  11 cacagaccgcttcattttctctccaacgtacaccgcaagatatccctttggcacatttgctactttcaatgacgtttggctgctgctaaatgtcgccctt 110  Q
    |||| ||||||||||||  |||||||||||||| |||||||||||||||||||||||||   ||||   ||| | |||||| || ||||| |  ||||||    
T  50904898 cacaaaccgcttcatttcttctccaacgtacactgcaagatatccctttggcacatttgtcgcttttgttgatgcttggctactactaaaggaagccctt 50904997  T
Q  111 cttatagctgcaggtaaacggaagcccattttaaat 146  Q
    ||||||||||| ||||||| ||||||||||||||||    
T  50904998 cttatagctgctggtaaacagaagcccattttaaat 50905033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 18 - 146
Target Start/End: Original strand, 38028879 - 38029004
Alignment:
Q  18 cgcttcattttctctccaacgtacaccgcaagatatccctttggcacatttgctactttcaatgacgtttggctgctgctaaatgtcgcccttcttatag 117  Q
    |||||||||| ||||||||||||||| |||||||| ||||||||||||||   ||||||   ||| |||||||| ||||| ||||  |||| ||| ||||    
T  38028879 cgcttcatttgctctccaacgtacactgcaagatagccctttggcacattcaatacttt---tgatgtttggctactgctgaatgaagcccgtctaatag 38028975  T
Q  118 ctgcaggtaaacggaagcccattttaaat 146  Q
    |||||||||||||||| ||||||| ||||    
T  38028976 ctgcaggtaaacggaaacccatttcaaat 38029004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 16 - 141
Target Start/End: Original strand, 38036904 - 38037026
Alignment:
Q  16 accgcttcattttctctccaacgtacaccgcaagatatccctttggcacatttgctactttcaatgacgtttggctgctgctaaatgtcgcccttcttat 115  Q
    |||| ||||||| ||||||||||||||| |||||||| ||||||||||||||   ||||||    || |||||||| |||||||| |  |||| ||| ||    
T  38036904 accgtttcatttgctctccaacgtacactgcaagatagccctttggcacattcaatacttt---ggatgtttggctactgctaaaggaagcccgtctaat 38037000  T
Q  116 agctgcaggtaaacggaagcccattt 141  Q
    |||||||||||||||||| |||||||    
T  38037001 agctgcaggtaaacggaaacccattt 38037026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 18 - 146
Target Start/End: Original strand, 38040194 - 38040319
Alignment:
Q  18 cgcttcattttctctccaacgtacaccgcaagatatccctttggcacatttgctactttcaatgacgtttggctgctgctaaatgtcgcccttcttatag 117  Q
    |||||||||| ||||||||||||||| |||||||| ||||||||||||||   ||||||   ||| |||||||| ||||| ||||  |||| ||| ||||    
T  38040194 cgcttcatttgctctccaacgtacactgcaagatagccctttggcacattcaatacttt---tgatgtttggctactgctgaatgaagcccgtctaatag 38040290  T
Q  118 ctgcaggtaaacggaagcccattttaaat 146  Q
    |||||| |||||| || ||||||| ||||    
T  38040291 ctgcagataaacgaaaacccatttcaaat 38040319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 16 - 141
Target Start/End: Original strand, 38033890 - 38034012
Alignment:
Q  16 accgcttcattttctctccaacgtacaccgcaagatatccctttggcacatttgctactttcaatgacgtttggctgctgctaaatgtcgcccttcttat 115  Q
    |||||||||||| |||||||| |||||| |||||||| ||||||||||||||   | ||||   ||| ||||| || ||||| ||||  |||| ||| ||    
T  38033890 accgcttcatttgctctccaatgtacactgcaagatagccctttggcacattcaatgcttt---tgatgtttgactactgctgaatgaagcccgtctaat 38033986  T
Q  116 agctgcaggtaaacggaagcccattt 141  Q
    |||||||||||||||||| |||||||    
T  38033987 agctgcaggtaaacggaaacccattt 38034012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 23 - 146
Target Start/End: Complemental strand, 50909982 - 50909862
Alignment:
Q  23 cattttctctccaacgtacaccgcaagatatccctttggcacatttgctactttcaatgacgtttggctgctgctaaatgtcgcccttcttatagctgca 122  Q
    ||||| ||||||||| ||||| |||||||| ||||||||||||||   ||||||   ||| |||||||| ||||||||||  || | ||| ||||||||     
T  50909982 catttgctctccaacatacactgcaagataaccctttggcacattcaatacttt---tgatgtttggctactgctaaatgaagctcgtctaatagctgct 50909886  T
Q  123 ggtaaacggaagcccattttaaat 146  Q
    ||||||||||| ||||||| ||||    
T  50909885 ggtaaacggaaacccatttcaaat 50909862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 48840824 - 48840882
Alignment:
Q  18 cgcttcattttctctccaacgtacaccgcaagatatccctttggcacatttgctacttt 76  Q
    |||||||| | |||||| |||||||  |||||||||||||||||||||| |||||||||    
T  48840824 cgcttcatctcctctccgacgtacaatgcaagatatccctttggcacatctgctacttt 48840882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 11 - 133
Target Start/End: Complemental strand, 55084820 - 55084698
Alignment:
Q  11 cacagaccgcttcattttctctccaacgtacaccgcaagatatccctttggcacatttgctactttcaatgacgtttggctgctgctaaatgtcgccctt 110  Q
    |||| |||||||||||||||||||||| ||||| |||||| | || |||||||||||  |   |||  |||| |||||||| |   ||||||  | ||||    
T  55084820 cacaaaccgcttcattttctctccaacatacactgcaagacacccttttggcacattcacagattttgatgatgtttggctacccgtaaatgaagtcctt 55084721  T
Q  111 cttatagctgcaggtaaacggaa 133  Q
    || ||||||||||||||||||||    
T  55084720 ctaatagctgcaggtaaacggaa 55084698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 46 - 137
Target Start/End: Original strand, 48838793 - 48838884
Alignment:
Q  46 caagatatccctttggcacatttgctactttcaatgacgttt-ggctgctgctaaatgtcgcccttcttatagctgcaggtaaacggaagccc 137  Q
    ||||||| ||| ||||||||||    ||||||||||| |||| |||| |||||||| || ||| ||||||| |||||||||||||||||||||    
T  48838793 caagatagcccgttggcacattcatgactttcaatgatgttttggctactgctaaaggt-gccattcttattgctgcaggtaaacggaagccc 48838884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 67
Target Start/End: Original strand, 50911975 - 50912031
Alignment:
Q  11 cacagaccgcttcattttctctccaacgtacaccgcaagatatccctttggcacatt 67  Q
    |||| |||| ||||| || |||||||| || ||||||||||| ||||||||||||||    
T  50911975 cacaaaccgtttcatcttgtctccaacatataccgcaagatagccctttggcacatt 50912031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 18 - 146
Target Start/End: Original strand, 21604867 - 21604992
Alignment:
Q  18 cgcttcattttctctccaacgtacaccgcaagatatccctttggcacatttgctactttcaatgacgtttggctgctgctaaatgtcgcccttcttatag 117  Q
    |||||||||| |||||| || ||||| |||||||| ||||||||||||||   ||||||   ||| |||||||| ||||| ||||  |||| ||| ||||    
T  21604867 cgcttcatttgctctcctacttacactgcaagatagccctttggcacattcaatacttt---tgatgtttggctactgctgaatgaagcccgtctaatag 21604963  T
Q  118 ctgcaggtaaacggaagcccattttaaat 146  Q
    |||||||||||||||| ||||||| ||||    
T  21604964 ctgcaggtaaacggaaacccatttcaaat 21604992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 67
Target Start/End: Original strand, 21607407 - 21607458
Alignment:
Q  16 accgcttcattttctctccaacgtacaccgcaagatatccctttggcacatt 67  Q
    |||||||||||| ||||||||| || |||||||||||||||||||| |||||    
T  21607407 accgcttcatttgctctccaacatataccgcaagatatccctttggtacatt 21607458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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