View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2977_low_5 (Length: 487)
Name: NF2977_low_5
Description: NF2977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2977_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 175 - 469
Target Start/End: Original strand, 2319461 - 2319755
Alignment:
| Q |
175 |
gctttgcaatagcttgaatgacacagatcttctcaaacagctctcattcatgaatctccgagtatcttctccaacattatagttttttaattaatttttc |
274 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2319461 |
gctttgcaatagcttgaatgacacagatcttctcaaacaactctcattcatgaatctccgagtatcttctccaacattatagttttttaattaatttttc |
2319560 |
T |
|
| Q |
275 |
atatgatttaactatggtttgaaaattagagtaaacaaactaaaatagtgaatcgatcttctcctcttgtgaaatcaatttaacattgcagcagcttcta |
374 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
2319561 |
atatgatttaactatggtttgaaaattagagtaaacaaactaaaatagtgaatcgatcttctcctcttgtgaaatcaatttaacattgcagctgcttcta |
2319660 |
T |
|
| Q |
375 |
tgtggaacacactgccatacacaaactcaattataagaaaaattggaatctgcaattttcatgaagaaaataaaaatcgaagtctacaagcatct |
469 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
2319661 |
tgtggaacacactgccatacacaaactcaattataagaaaaattggaatctgcaattttcatgaagaaaataaaaattgaagtctacaagcatct |
2319755 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 153; Significance: 7e-81; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 153; E-Value: 7e-81
Query Start/End: Original strand, 175 - 327
Target Start/End: Complemental strand, 1259554 - 1259402
Alignment:
| Q |
175 |
gctttgcaatagcttgaatgacacagatcttctcaaacagctctcattcatgaatctccgagtatcttctccaacattatagttttttaattaatttttc |
274 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1259554 |
gctttgcaatagcttgaatgacacagatcttctcaaacagctctcattcatgaatctccgagtatcttctccaacattatagttttttaattaatttttc |
1259455 |
T |
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| Q |
275 |
atatgatttaactatggtttgaaaattagagtaaacaaactaaaatagtgaat |
327 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1259454 |
atatgatttaactatggtttgaaaattagagtaaacaaactaaaatagtgaat |
1259402 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 179 - 327
Target Start/End: Complemental strand, 37242838 - 37242690
Alignment:
| Q |
179 |
tgcaatagcttgaatgacacagatcttctcaaacagctctcattcatgaatctccgagtatcttctccaacattatagttttttaattaatttttcatat |
278 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37242838 |
tgcaatagcttgaatgacacagatcttctcaaacagctctcattcatgaatctccgagtatcttctccaacattatagttttttaattaatttttcatat |
37242739 |
T |
|
| Q |
279 |
gatttaactatggtttgaaaattagagtaaacaaactaaaatagtgaat |
327 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37242738 |
gatttaactatggtttgaaaattagagtaaacaaactaaaatagtgaat |
37242690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 177 - 283
Target Start/End: Original strand, 34873167 - 34873273
Alignment:
| Q |
177 |
tttgcaatagcttgaatgacacagatcttctcaaacagctctcattcatgaatctccgagtatcttctccaacattatagttttttaattaatttttcat |
276 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34873167 |
tttgcaatagcttgaatgacacaggtcttctcaaacagctctcattcatgaatctccgagtatcttctccaacattatagttttttaattaatttttcat |
34873266 |
T |
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| Q |
277 |
atgattt |
283 |
Q |
| |
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|| |||| |
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|
| T |
34873267 |
ataattt |
34873273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 149; Significance: 2e-78; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 175 - 327
Target Start/End: Complemental strand, 18246807 - 18246655
Alignment:
| Q |
175 |
gctttgcaatagcttgaatgacacagatcttctcaaacagctctcattcatgaatctccgagtatcttctccaacattatagttttttaattaatttttc |
274 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
18246807 |
gctttgcaatagcttgaatgacacagatcttctcaaacagctctcattcatgaatctccgagcatcttctccaacattatagttttttaattaatttttc |
18246708 |
T |
|
| Q |
275 |
atatgatttaactatggtttgaaaattagagtaaacaaactaaaatagtgaat |
327 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
18246707 |
atatgatttaactatggtttgaaaattagagtaaacaaactaaaatagtgaat |
18246655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 148; Significance: 7e-78; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 176 - 327
Target Start/End: Original strand, 16989431 - 16989582
Alignment:
| Q |
176 |
ctttgcaatagcttgaatgacacagatcttctcaaacagctctcattcatgaatctccgagtatcttctccaacattatagttttttaattaatttttca |
275 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16989431 |
ctttgcaatagcttgaatgacacaaatcttctcaaacagctctcattcatgaatctccgagtatcttctccaacattatagttttttaattaatttttca |
16989530 |
T |
|
| Q |
276 |
tatgatttaactatggtttgaaaattagagtaaacaaactaaaatagtgaat |
327 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16989531 |
tatgatttaactatggtttgaaaattagagtaaacaaactaaaatagtgaat |
16989582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 311 - 469
Target Start/End: Original strand, 16989980 - 16990138
Alignment:
| Q |
311 |
aaactaaaatagtgaatcgatcttctcctcttgtgaaatcaatttaacattgcagcagcttctatgtggaacacactgccatacacaaactcaattataa |
410 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16989980 |
aaactaaaatagtgaatcgatcttctcctcttgtgaaatcaatttaacattgcagctgcttctatgtggaacacactgccatacacaaactcaattataa |
16990079 |
T |
|
| Q |
411 |
gaaaaattggaatctgcaattttcatgaagaaaataaaaatcgaagtctacaagcatct |
469 |
Q |
| |
|
|||||||||||||||| || ||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
16990080 |
gaaaaattggaatctgaaaatttcatgaagaaaataaaaattgaagtctacaagcatct |
16990138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 141; Significance: 1e-73; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 175 - 327
Target Start/End: Complemental strand, 31235006 - 31234854
Alignment:
| Q |
175 |
gctttgcaatagcttgaatgacacagatcttctcaaacagctctcattcatgaatctccgagtatcttctccaacattatagttttttaattaatttttc |
274 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31235006 |
gctttgcaatagcttgaatgacatagatcttcttaaatagctctcattcatgaatctccgagtatcttctccaacattatagttttttaattaatttttc |
31234907 |
T |
|
| Q |
275 |
atatgatttaactatggtttgaaaattagagtaaacaaactaaaatagtgaat |
327 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31234906 |
atatgatttaactatggtttgaaaattagagtaaacaaactaaaatagtgaat |
31234854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 345 - 404
Target Start/End: Complemental strand, 32972465 - 32972406
Alignment:
| Q |
345 |
gaaatcaatttaacattgcagcagcttctatgtggaacacactgccatacacaaactcaa |
404 |
Q |
| |
|
||||||||| || ||||||| ||||||||| ||||||||||| ||||||||||||||| |
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|
| T |
32972465 |
gaaatcaatgaaatattgcagttgcttctatggggaacacactgacatacacaaactcaa |
32972406 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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