View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2977_low_6 (Length: 382)
Name: NF2977_low_6
Description: NF2977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2977_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 19 - 365
Target Start/End: Original strand, 38974070 - 38974420
Alignment:
| Q |
19 |
aacatttaaatgtggatctactttcacaacaagtgatgctaaggttaaacttatcatgacatataaaatgtggttaatattgtgggatcaaggaacgatt |
118 |
Q |
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| T |
38974070 |
aacatttaactgtggatctactttcacaacaagtgatgctaaggttaaacttgtcatgacatataaaatgtggttagtatcgtgggatcaaggaacgatt |
38974169 |
T |
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| Q |
119 |
gaaagttgagacaannnnnnnagtagtatacaaggatctccgtacatagtttgtgaaattttgagtcgattatttttgtcataaaccnnnnnnncttagc |
218 |
Q |
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| T |
38974170 |
gaaagttgagacaatttttttagtagtatacaaggatctccgtacatactttgtgaaattttgagtcaattatttttgtcataaaccaaaaaaacttggc |
38974269 |
T |
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| Q |
219 |
ctatttagctcgattccaattttaggccattatattttattgtaacaaaat----aatccatgccgtagtgtggcatatcaaaattcaaaaggaagatta |
314 |
Q |
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| T |
38974270 |
ctatttagctcgattccaattttgggccattatattttattgcaacaaaataaataatccatgccgtagtgtggcatatcaaaattcaaaaggaagatta |
38974369 |
T |
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| Q |
315 |
attatataaaaacaaaaggaaattacatccatcattttattctaaataact |
365 |
Q |
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| T |
38974370 |
attatataaaaacaaaaggaaattacatccatcattttattctaaataact |
38974420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 19 - 66
Target Start/End: Complemental strand, 50709393 - 50709346
Alignment:
| Q |
19 |
aacatttaaatgtggatctactttcacaacaagtgatgctaaggttaa |
66 |
Q |
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| T |
50709393 |
aacatttaaatttggatctactttcaaaacaagcggtgctaaggttaa |
50709346 |
T |
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