View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2977_low_8 (Length: 331)

Name: NF2977_low_8
Description: NF2977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2977_low_8
NF2977_low_8
[»] chr8 (2 HSPs)
chr8 (13-221)||(5662761-5662970)
chr8 (238-313)||(35349208-35349283)
[»] chr7 (2 HSPs)
chr7 (13-180)||(11649352-11649515)
chr7 (13-47)||(22007561-22007595)
[»] chr3 (5 HSPs)
chr3 (13-158)||(52131068-52131212)
chr3 (136-221)||(31688059-31688144)
chr3 (136-221)||(31896723-31896808)
chr3 (136-221)||(31912432-31912517)
chr3 (136-193)||(31946080-31946137)
[»] scaffold0003 (2 HSPs)
scaffold0003 (103-221)||(36755-36873)
scaffold0003 (109-188)||(42943-43023)
[»] chr6 (2 HSPs)
chr6 (109-188)||(27444338-27444418)
chr6 (121-167)||(4660112-4660158)
[»] scaffold0475 (1 HSPs)
scaffold0475 (121-167)||(7410-7456)
[»] chr4 (1 HSPs)
chr4 (226-313)||(38467450-38467536)


Alignment Details
Target: chr8 (Bit Score: 166; Significance: 8e-89; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 13 - 221
Target Start/End: Complemental strand, 5662970 - 5662761
Alignment:
Q  13 gagaggaagaagtggaagaatcacgatttacagagaaagggggagtggacggtg-gcgatggagagaatgggtgcgagagaaagggggtggagatgcgga 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |||    
T  5662970 gagaggaagaagtggaagaatcacgatttacagagaaagggggagtggacggtgtgcgatggggagaatgggtgcgagagaaagggggtggagatgggga 5662871  T
Q  112 atcgcagagagatggaaagagaggagggttaggtcagagccatggttcccaatgagatggatatgcaacgctgtattggaaacggttagcattaattgtt 211  Q
    ||| |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| |||| |||||||||||    
T  5662870 atcacagagagatggagagagaggagggttaggtcagagccatggttcgcaatgagatggatatgcaacactgtattggaaacagttaacattaattgtt 5662771  T
Q  212 tatcatttac 221  Q
    | ||||||||    
T  5662770 tgtcatttac 5662761  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 238 - 313
Target Start/End: Complemental strand, 35349283 - 35349208
Alignment:
Q  238 ataaaagctcatagccttggtacaccacttttgcatgggaaaacaaaagccattttaatttgaaggcataagttgg 313  Q
    |||||||| | ||||||||||||| ||| ||||||||||||||||||||||   ||||||||| |||| |||||||    
T  35349283 ataaaagcacctagccttggtacaacacatttgcatgggaaaacaaaagcctgcttaatttgacggcagaagttgg 35349208  T

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Target: chr7 (Bit Score: 119; Significance: 9e-61; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 13 - 180
Target Start/End: Original strand, 11649352 - 11649515
Alignment:
Q  13 gagaggaagaagtggaagaatcacgatttacagagaaagggggagtggacggtggcgatggagagaatgggtgcgagagaaagggggtggagatgcggaa 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| ||||    
T  11649352 gagaggaagaagtggaagaatcacgatttacagagaaagggggagtggacggtggcgatggggagaatgggtgcgagagaaaggcggtggagatggggaa 11649451  T
Q  113 tcgcagagagatggaaagagaggagggttaggtcagagccatggttcccaatgagatggatatgcaac 180  Q
    ||    | ||||||| ||| ||||||||||||||| |||||||||| |||||||||||||||||||||    
T  11649452 tc----atagatggagagaaaggagggttaggtcaaagccatggtttccaatgagatggatatgcaac 11649515  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 47
Target Start/End: Complemental strand, 22007595 - 22007561
Alignment:
Q  13 gagaggaagaagtggaagaatcacgatttacagag 47  Q
    |||||||||||||||||||||| ||||||||||||    
T  22007595 gagaggaagaagtggaagaatcgcgatttacagag 22007561  T

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Target: chr3 (Bit Score: 98; Significance: 3e-48; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 13 - 158
Target Start/End: Complemental strand, 52131212 - 52131068
Alignment:
Q  13 gagaggaagaagtggaagaatcacgatttacagagaaagggggagtggacggtggcgatggagagaatgggtgcgagagaaagggggtggagatgcggaa 112  Q
    ||||||||||||||||||||||||||||||||| |   | |||| |||||||||||||||| |||||||||||| |||||||||||||||||||| ||||    
T  52131212 gagaggaagaagtggaagaatcacgatttacagggtg-gcgggactggacggtggcgatggggagaatgggtgcaagagaaagggggtggagatggggaa 52131114  T
Q  113 tcgcagagagatggaaagagaggagggttaggtcagagccatggtt 158  Q
    ||| ||||||||||| ||||||||||||||||||||||||||||||    
T  52131113 tcgtagagagatggagagagaggagggttaggtcagagccatggtt 52131068  T

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Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 136 - 221
Target Start/End: Complemental strand, 31688144 - 31688059
Alignment:
Q  136 agggttaggtcagagccatggttcccaatgagatggatatgcaacgctgtattggaaacggttagcattaattgtttatcatttac 221  Q
    ||||||||||||||||||| ||| ||||| ||||||||||||||| || |||||||||| | || |||||||| ||| ||||||||    
T  31688144 agggttaggtcagagccattgtttccaataagatggatatgcaacactttattggaaaccgataacattaattatttgtcatttac 31688059  T

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Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 136 - 221
Target Start/End: Original strand, 31896723 - 31896808
Alignment:
Q  136 agggttaggtcagagccatggttcccaatgagatggatatgcaacgctgtattggaaacggttagcattaattgtttatcatttac 221  Q
    ||||||||||||||||||| ||| ||||| ||||||||||||||| || |||||||||  | || |||||||| ||| ||||||||    
T  31896723 agggttaggtcagagccattgtttccaataagatggatatgcaacactttattggaaatcgataacattaattatttgtcatttac 31896808  T

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Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 136 - 221
Target Start/End: Original strand, 31912432 - 31912517
Alignment:
Q  136 agggttaggtcagagccatggttcccaatgagatggatatgcaacgctgtattggaaacggttagcattaattgtttatcatttac 221  Q
    ||||||||||||||||||| ||| ||||| ||||||||||||||| || |||||||||  | || |||||||| ||| ||||||||    
T  31912432 agggttaggtcagagccattgtttccaataagatggatatgcaacactttattggaaatcgataacattaattatttgtcatttac 31912517  T

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Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 136 - 193
Target Start/End: Original strand, 31946080 - 31946137
Alignment:
Q  136 agggttaggtcagagccatggttcccaatgagatggatatgcaacgctgtattggaaa 193  Q
    ||||||||||||||||||| ||| ||||| ||||||||||||||| || |||||||||    
T  31946080 agggttaggtcagagccattgtttccaataagatggatatgcaacactttattggaaa 31946137  T

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Target: scaffold0003 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 103 - 221
Target Start/End: Original strand, 36755 - 36873
Alignment:
Q  103 agatgcggaatcgcagagagatggaaagagaggagggttaggtcagagccatggttcccaatgagatggatatgcaacgctgtattggaaacggttagca 202  Q
    ||||| ||||||| ||||||||||| ||| |||||||||| ||||||||||| ||| ||||||||||||||||||||| ||||||||||||| | || ||    
T  36755 agatgaggaatcgtagagagatggagagaaaggagggttaagtcagagccattgtttccaatgagatggatatgcaacactgtattggaaaccgataaca 36854  T
Q  203 ttaattgtttatcatttac 221  Q
    |||||| ||| ||||||||    
T  36855 ttaattatttgtcatttac 36873  T

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Target: scaffold0003; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 109 - 188
Target Start/End: Original strand, 42943 - 43023
Alignment:
Q  109 ggaatcgcagagagatggaaagagaggagggttaggtcagagcca-tggttcccaatgagatggatatgcaacgctgtatt 188  Q
    ||||||| ||||||||||| ||| ||||||||||||||||||||| || |||||||||| ||||||||||||| |||||||    
T  42943 ggaatcgtagagagatggagagaaaggagggttaggtcagagccattgtttcccaatgaaatggatatgcaacactgtatt 43023  T

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Target: chr6 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 109 - 188
Target Start/End: Complemental strand, 27444418 - 27444338
Alignment:
Q  109 ggaatcgcagagagatggaaagagaggagggttaggtcagagcca-tggttcccaatgagatggatatgcaacgctgtatt 188  Q
    ||||||| ||||||||||| ||| ||||||||||||||||||||| || |||||||||| ||||||||||||| |||||||    
T  27444418 ggaatcgtagagagatggagagaaaggagggttaggtcagagccattgtttcccaatgaaatggatatgcaacactgtatt 27444338  T

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Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 121 - 167
Target Start/End: Original strand, 4660112 - 4660158
Alignment:
Q  121 agatggaaagagaggagggttaggtcagagccatggttcccaatgag 167  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||    
T  4660112 agatggagagagaggagggttaggtcagagccatggttcccaatgag 4660158  T

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Target: scaffold0475 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0475
Description:

Target: scaffold0475; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 121 - 167
Target Start/End: Original strand, 7410 - 7456
Alignment:
Q  121 agatggaaagagaggagggttaggtcagagccatggttcccaatgag 167  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||    
T  7410 agatggagagagaggagggttaggtcagagccatggttcccaatgag 7456  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 226 - 313
Target Start/End: Original strand, 38467450 - 38467536
Alignment:
Q  226 aaatcatatgccataaaagctcatagccttggtacaccacttttgcatgggaaaacaaaagccattttaatttgaaggcataagttgg 313  Q
    |||||||||| ||||||||| | ||||||||||||| ||| ||||||| ||||||||||||||   ||||||||| |||| |||||||    
T  38467450 aaatcatatgtcataaaagcacctagccttggtacaacacatttgcat-ggaaaacaaaagcctacttaatttgacggcagaagttgg 38467536  T

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