View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2978_high_2 (Length: 479)
Name: NF2978_high_2
Description: NF2978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2978_high_2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 11 - 461
Target Start/End: Complemental strand, 26894374 - 26893928
Alignment:
| Q |
11 |
cacagacaaattccaaaaggtaagataccacaaaaacaaacaatccttcttctctttttgttaatccacttttctttcataatcaaaattatatcttttt |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26894374 |
cacagacaaattccaaaaggtaagataccacaaaaacaaacaatccttcttttccttttgttaatccacttttctttcataatcaaaattatatcttttt |
26894275 |
T |
|
| Q |
111 |
gttcaaactataaatgggaagagagtgaaaagacaaagaaaagcactcaccagaagcagcatctacaaatttgccatcaattaagagctgagtgtggtct |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
26894274 |
gttcaaactataaatgggaagagagtgaaaagacaaagaaaagcactcaccagaagcagcatctacaaatttgccatcaattaagagctgagtgtgatct |
26894175 |
T |
|
| Q |
211 |
acttgcaccgatggtttaatcggttgttcatcgatggcagcagcagtgctgtatttagagagtaatccacccagataaccattcccacctgaaagnnnnn |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
26894174 |
acttgcaccgatggtttaatcggttgttcatcgatggcagcagcagtgctgtatttagagagtaatccacccagataaccatttccacctgaaagtttgt |
26894075 |
T |
|
| Q |
311 |
nnnnnnnncttttcagtttatcattgagtatcaatcaatgtccttataaagtcaaaaaccctaatgaaaacctcaaattgaaacaccctttataatcacc |
410 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26894074 |
tttct----ttttcagtttgtcattgagtatcaatcaatgtccttataaagtcaaaaaccctaatgaaaacctcaaattgaaacaccctttataatcacc |
26893979 |
T |
|
| Q |
411 |
aattgaaatcaggattaacatctcctccaactgacacaaacatgagtttta |
461 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26893978 |
aattgaaatcaggattaacatctcctccaactgacacaaacatgagtttta |
26893928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University