View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2978_high_4 (Length: 318)
Name: NF2978_high_4
Description: NF2978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2978_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 14 - 302
Target Start/End: Original strand, 23547917 - 23548205
Alignment:
| Q |
14 |
agacttagccatgttatttttgagctggatgcgcaggttgtggttaattgcttcaaaggaatatctgttttatctagtatctccccttttattagggatt |
113 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | |
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| T |
23547917 |
agacttagccatgttatttttgagctgaatgcgcaggttgtggttaattgcttcaaaggaatatctattttatctagtatctccccttttattagggact |
23548016 |
T |
|
| Q |
114 |
gtcacgatttgtatgcaaatatggctgatgtttctgttgtttttactagtcgttattgtaatgaggctgcccatgaacttgctcgggctgccaaaacttt |
213 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| ||||||||||||||| |
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| T |
23548017 |
gtcacgatttgtatgccaatatggctgatgtttctgttgtttttattagtcgttattgtaatgaggctgcccatgagcttgctcaggctgccaaaacttt |
23548116 |
T |
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| Q |
214 |
agggactcgtacttgggagggaaattcccataatcctttggtatgacccttgtttgattcagttatgttatcttaatatatgaaagttg |
302 |
Q |
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|||||||||||||||||||||||||||||| || ||||||||||| |||||||||||||||||| |||||||||||||||||||||||| |
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| T |
23548117 |
agggactcgtacttgggagggaaattcccaaaaccctttggtatggcccttgtttgattcagttctgttatcttaatatatgaaagttg |
23548205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 98 - 240
Target Start/End: Original strand, 52758110 - 52758253
Alignment:
| Q |
98 |
ccttttattagggattgtcacgatttgtatgcaaatatggctgatgtttctgttgtttttactagtcgttattgtaatgaggctgcccatga-acttgct |
196 |
Q |
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|||||||||||||| ||||| |||||||| || |||||||||||||||||||||||||||| || ||||| ||||||||||| ||| ||||| | ||||| |
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| T |
52758110 |
ccttttattagggactgtcaagatttgtacgccaatatggctgatgtttctgttgtttttattaatcgttgttgtaatgaggttgcacatgagatttgct |
52758209 |
T |
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| Q |
197 |
cgggctgccaaaactttagggactcgtacttgggagggaaattc |
240 |
Q |
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| T |
52758210 |
aaggctgccaaaacattggggtcgtgtacttgggagggaaattc |
52758253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 14 - 302
Target Start/End: Complemental strand, 30143639 - 30143351
Alignment:
| Q |
14 |
agacttagccatgttatttttgagctggatgcgcaggttgtggttaattgcttcaaaggaatatctgttttatctagtatctccccttttattagggatt |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | |
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| T |
30143639 |
agacttagccatgttatttttgagctggatgcgcaggttgtggttaattgcttcaaaggaatatctactttatctagtatctccccttttattagggact |
30143540 |
T |
|
| Q |
114 |
gtcacgatttgtatgcaaatatggctgatgtttctgttgtttttactagtcgttattgtaatgaggctgcccatgaacttgctcgggctgccaaaacttt |
213 |
Q |
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|||||||||||||||| ||||| ||| |||||| |||||||||||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||||| |
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| T |
30143539 |
gtcacgatttgtatgccaatatagcttatgtttatgttgtttttactagtcgttattgtaatgaggctgcgcatgagcttgctcaggctgccaaaacttt |
30143440 |
T |
|
| Q |
214 |
agggactcgtacttgggagggaaattcccataatcctttggtatgacccttgtttgattcagttatgttatcttaatatatgaaagttg |
302 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| | ||| |||||||||||||||||||| |
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| T |
30143439 |
agggactcgtacttgggagggaaattcccaaaatcctttggtatggcccttgtttgattcagatttgtcatcttaatatatgaaagttg |
30143351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 98 - 240
Target Start/End: Original strand, 18090329 - 18090472
Alignment:
| Q |
98 |
ccttttattagggattgtcacgatttgtatgcaaatatggctgatgtttctgttgtttttactagtcgttattgtaatgaggctgcccatga-acttgct |
196 |
Q |
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|
|||||||||||||| ||||| |||||||| || |||||||||||||||||||||||||||| || ||||| ||||||||||| ||| ||||| | ||||| |
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| T |
18090329 |
ccttttattagggactgtcaagatttgtacgccaatatggctgatgtttctgttgtttttattaatcgttgttgtaatgaggttgcacatgagatttgct |
18090428 |
T |
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| Q |
197 |
cgggctgccaaaactttagggactcgtacttgggagggaaattc |
240 |
Q |
| |
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|||||||||||| || ||| | ||||||||||||||||||| |
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| T |
18090429 |
aaggctgccaaaacattggggtcgtgtacttgggagggaaattc |
18090472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 75 - 258
Target Start/End: Original strand, 23748810 - 23748993
Alignment:
| Q |
75 |
tatctgttttatctagtatctccccttttattagggattgtcacgatttgtatgcaaatatggctgatgtttctgttgtttttactagtcgttattgtaa |
174 |
Q |
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||||||| ||||||||||| ||||||||||| |||| |||||||| |||||||| ||||||||||||||||||||| |||||| ||||||| || || |
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| T |
23748810 |
tatctgtcttatctagtattgccccttttattcgggactgtcacgaattgtatgccaatatggctgatgtttctgttttttttattagtcgtgtctgaaa |
23748909 |
T |
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| Q |
175 |
tgaggctgcccatgaacttgctcgggctgccaaaactttagggactcgtacttgggagggaaattcccataatcctttggtatg |
258 |
Q |
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| ||||||| ||||| ||||||| |||| || |||| || ||| |||||||||||||||| |||||| | |||||| ||||||| |
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| T |
23748910 |
taaggctgcgcatgagcttgctcaggcttcctaaacattggggtctcgtacttgggaggggaattcctacaatcctatggtatg |
23748993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 32 - 232
Target Start/End: Original strand, 14245387 - 14245587
Alignment:
| Q |
32 |
tttgagctggatgcgcaggttgtggttaattgcttcaaaggaatatctgttttatctagtatctccccttttattagggattgtcacgatttgtatgcaa |
131 |
Q |
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||||| |||||||| ||||| ||| ||||||| |||||||| | || || ||||||||| | ||||||| |||| |||| ||||| || |||||||| | |
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| T |
14245387 |
tttgaactggatgcacaggtggtgattaattgtttcaaagggctgtcagtcttatctagtttatccccttatatttgggactgtcatgagttgtatgcca |
14245486 |
T |
|
| Q |
132 |
atatggctgatgtttctgttgtttttactagtcgttattgtaatgaggctgcccatgaacttgctcgggctgccaaaactttagggactcgtacttggga |
231 |
Q |
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|||||| ||||||||||||| ||| | ||||||| || ||||||| ||| | ||| || |||| ||||| ||||||||| ||| | |||||||||| |
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| T |
14245487 |
atatggttgatgtttctgttttttacattagtcgtgcctgcaatgaggttgcgcgtgagctagctcaggctggcaaaactttggggtcgtgtacttggga |
14245586 |
T |
|
| Q |
232 |
g |
232 |
Q |
| |
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| |
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|
| T |
14245587 |
g |
14245587 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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