View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2978_high_7 (Length: 248)
Name: NF2978_high_7
Description: NF2978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2978_high_7 |
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Alignment Details
Target: chr6 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 31537973 - 31538213
Alignment:
| Q |
1 |
acacaaacaatcttagcataagatgtatcatgaaagagaattacaagataattcaagtcaatgactcctaagaatacacgaaccaaaatatataacaact |
100 |
Q |
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| T |
31537973 |
acacaaacaatcttagcataagatgtatcatgaaagagaattacaagataattcaagtcaatgactcctaaaaatacacgaaccaaaatat--aacaact |
31538070 |
T |
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| Q |
101 |
cctaaaaacattacaacccaagcaaacaatgagttgagagtttcaatgataaagatcaaaattaaaacccattcttaaatttaatccatatctatcctaa |
200 |
Q |
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| T |
31538071 |
cctaaaaacattacaacccaagcaaacaatgagttgagagtttcaatgataaagatcaaaattaaaacccattcttaaatttaatccatatctatcctaa |
31538170 |
T |
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| Q |
201 |
gatgaatttgatcatattcatgattattccttcattcatctca |
243 |
Q |
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| T |
31538171 |
gatgaatttgaccatattcatgattattccttcattaatctca |
31538213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 48
Target Start/End: Complemental strand, 39858295 - 39858252
Alignment:
| Q |
5 |
aaacaatcttagcataagatgtatcatgaaagagaattacaaga |
48 |
Q |
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| T |
39858295 |
aaacaatcatagcacaagatgtatcatgaaagataattacaaga |
39858252 |
T |
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