View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2978_low_11 (Length: 237)
Name: NF2978_low_11
Description: NF2978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2978_low_11 |
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| [»] scaffold0086 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 44314512 - 44314291
Alignment:
| Q |
1 |
gatgtgagcttcaacataactttcccttttcccgaaacagcagcagtttgagagtcaccaaggtaaaccagttcttctccatcccccacagtattgtagg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44314512 |
gatgtgagcttcaacataactttcccttttcccgaaacagcagcagttcgagagtcaccaaggtaaaccagttcttctccatcccccacagtattgtagg |
44314413 |
T |
|
| Q |
101 |
aggtgaaggcatccttagtagcacatatatgtcgggtagctccagagtctaccacccatttgttcacatcagtcacaatgtttgcttcagcaatgactgc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
44314412 |
aggtgaaggcatccttagtagcacatatatgtcgggtagctccagagtctaccacccatttgttcacatcagtcacaatgtttgcttcagcaataactgc |
44314313 |
T |
|
| Q |
201 |
agcaataatgtcatcatctcct |
222 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
44314312 |
agcaataatgtcatcatctcct |
44314291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 34098380 - 34098601
Alignment:
| Q |
1 |
gatgtgagcttcaacataactttcccttttcccgaaacagcagcagtttgagagtcaccaaggtaaaccagttcttctccatcccccacagtattgtagg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34098380 |
gatgtgagcttcaacataactttcccttttcccgaaacagcagcagttcgagagtcaccaaggtaaaccagttcttctccatcccccacagtattgtagg |
34098479 |
T |
|
| Q |
101 |
aggtgaaggcatccttagtagcacatatatgtcgggtagctccagagtctaccacccatttgttcacatcagtcacaatgtttgcttcagcaatgactgc |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
34098480 |
aggtgaaggcatccttagtagcacatatatgtcgggtagctccagagtctaccacccatttgttcacatcagtcacaatgtttgcttcagcaataactgc |
34098579 |
T |
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| Q |
201 |
agcaataatgtcatcatctcct |
222 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
34098580 |
agcaataatgtcatcatctcct |
34098601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0086 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: scaffold0086
Description:
Target: scaffold0086; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 40060 - 40281
Alignment:
| Q |
1 |
gatgtgagcttcaacataactttcccttttcccgaaacagcagcagtttgagagtcaccaaggtaaaccagttcttctccatcccccacagtattgtagg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
40060 |
gatgtgagcttcaacataactttcccttttcccgaaaaagcagcagttcgagagtcaccaaggtaaaccagttcttctccatcccccacaatattgtagg |
40159 |
T |
|
| Q |
101 |
aggtgaaggcatccttagtagcacatatatgtcgggtagctccagagtctaccacccatttgttcacatcagtcacaatgtttgcttcagcaatgactgc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
40160 |
aggtgaaggcatccttagtagcacatatatgtcgggtagctccagagtctaccacccatttgttcacatcagtcacaatatttgcttcagcaatgactgc |
40259 |
T |
|
| Q |
201 |
agcaataatgtcatcatctcct |
222 |
Q |
| |
|
||||||||||| |||||||||| |
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|
| T |
40260 |
agcaataatgttatcatctcct |
40281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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