View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2978_low_3 (Length: 428)
Name: NF2978_low_3
Description: NF2978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2978_low_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 21 - 417
Target Start/End: Complemental strand, 44694984 - 44694588
Alignment:
| Q |
21 |
agtatcatctttaatagttttagtgnnnnnnngttcattgcatctgagtatttcctgaaatcacaatgaattcataggtggaactacagtacttgaatag |
120 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44694984 |
agtatcatctttaatagttttagtgtttttttgttcattgcatctgagtatttcctgaaatcacaatgaattcataggtggaactacagtacttgaatag |
44694885 |
T |
|
| Q |
121 |
attcactgggattactggatgcattggattattaggaaacgaagaaggagcatatgaccctgttgtaaaattatcaggccttttaggaacaagcattctg |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44694884 |
attcactgggattactggatgcattggattattaggaaacgaagaaggagcatatgaccctgttgtaaaattatcaggccttttaggaacaagcattctg |
44694785 |
T |
|
| Q |
221 |
tccctgggagccaatgttgccttgcacataccaacaagatcaataaccaagttgactgctggcttcggcttaaacactgccttccttgaagcttcattga |
320 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44694784 |
tccctgggagccaatgttgccttgcacataccaacaagatcaataaccaagttgactgctggcttcggcttaaacactgccttccttgaagcttcattga |
44694685 |
T |
|
| Q |
321 |
ccttgtaagatatatccatcaaaaactactggtgatctataaactaactttaggatgtaattaatcgttactgcttagtgttctgctactgtttctt |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44694684 |
ccttgtaagatatatccatcaaaaactactggtgatctataaactaactttaggatgtaattaatcgttactgcttagtgttctgctactgtttctt |
44694588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University