View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2978_low_4 (Length: 424)
Name: NF2978_low_4
Description: NF2978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2978_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 19 - 403
Target Start/End: Original strand, 36521239 - 36521623
Alignment:
| Q |
19 |
tccatgccatgcatcagccatgagacactgtcgtttagttttctttctgaccattggattttttaaacatcaaaatccagtgatgacttcctcaatgttg |
118 |
Q |
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| T |
36521239 |
tccatgccatgcatcagccatgagacactgtcgtttagttttctttctgaccattggatttgttaaacatcaaaatccagtgatgacttcctcaatgttg |
36521338 |
T |
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| Q |
119 |
agcttgtttgcatgggccctacctcgtgcccttctggataaatgattaatttgaattttggatgtagtacactacaatgtttttaaggtaaactctttag |
218 |
Q |
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| T |
36521339 |
agcttgcttgcatgggccctacctcgtgcccttctggataaatgattaattggaattttggatgtagtacactacaatgtttttaaggtaaactctttag |
36521438 |
T |
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| Q |
219 |
taatgaaaagaattttatcagcttataagggtaaatattggacgtcattgtattcatattgtggtcactaataaattctttttcatcatcaaatagtata |
318 |
Q |
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| T |
36521439 |
taatgaaaagaattttatcagcttataagggtaaatattggtcgtcattgtattcatattgtggtcactaataaattctttttcatcatcaaatagtata |
36521538 |
T |
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| Q |
319 |
ccaaatgtatgacatggtaaaagaatgaaatcataatttttatcaagtacgaatcaaacacataatagaatttatatcataatat |
403 |
Q |
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| T |
36521539 |
ccaaatgtatgacatggtaaaagaatgaaatcataatttttatcaagtacgaatcaaacacataatataatttatatcataatat |
36521623 |
T |
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