View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2978_low_5 (Length: 379)
Name: NF2978_low_5
Description: NF2978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2978_low_5 |
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| [»] chr3 (6 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 358; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 18 - 379
Target Start/End: Original strand, 5374172 - 5374533
Alignment:
| Q |
18 |
attccattctccatcacattctctccttattagacaccaaacaagcttttcaaacttccatactctccactagatggaagaatctcccaaaccatattcc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5374172 |
attccattctccatcacattctctccttattagacaccaaacaagcttttcaaacttccatactctccactagatggaagaatctcccaaaccatattcc |
5374271 |
T |
|
| Q |
118 |
aacccttagattaagttctccagtctttaactctttcgacagtttcgcaaaatcagtttgtctgattttatctcatcgcgactatttaacttctctccac |
217 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5374272 |
aacccttagattaagttctccagtctttaactctttcgacagtttcgcaaaatcagtttgtctgattttatctcatcgcgactatttaacttctctccac |
5374371 |
T |
|
| Q |
218 |
actctagatctttaccaccgcccacatgatttcgatttcgtgtgccctgacatactcaaaagcattgtatactatactgttacacataatgtccagcgag |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5374372 |
actctagatctttaccaccgcccacatgatttcgatttcatgtgccctgacatactcaaaagcattgtatactatactgttacacataatgtccagcgag |
5374471 |
T |
|
| Q |
318 |
tacgaatctgtgtcacttgtaatattcaacaacttccgtcttgcttattttcatctcaaact |
379 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5374472 |
tacgaatctgtgtcacttgtaatattcaacaacttccgtcttgcttattttcatctcaaact |
5374533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 146 - 379
Target Start/End: Original strand, 5368543 - 5368776
Alignment:
| Q |
146 |
aactctttcgacagtttcgcaaaatcagtttgtctgattttatctcatcgcgactatttaacttctctccacactctagatctttaccaccgcccacatg |
245 |
Q |
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||||||||| ||||||||| ||||||| | || ||||||||||| |||||| |||||||||||||||| |||||||||||||||||| |||||| || |
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| T |
5368543 |
aactctttcaacagtttcgtggaatcagtgtctcggattttatctcttcgcgatgatttaacttctctccaaactctagatctttaccactgcccacgtg |
5368642 |
T |
|
| Q |
246 |
atttcgatttcgtgtgccctgacatactcaaaagcattgtatactatactgttacacataatgtccagcgagtacgaatctgtgtcacttgtaatattca |
345 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| |
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| T |
5368643 |
atttcgatttcgtgtgccctgacatactcaaaagcattgtatactatactgttacatataatgtccagcgagtacgagtctgtgtcacttgtaatattca |
5368742 |
T |
|
| Q |
346 |
acaacttccgtcttgcttattttcatctcaaact |
379 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |
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| T |
5368743 |
acaacttccgtcttgcttattttcatctcaaact |
5368776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 18 - 285
Target Start/End: Original strand, 5355970 - 5356240
Alignment:
| Q |
18 |
attccattctccatcacattctctccttattagacaccaaacaagcttttcaaacttccatactctccactagatggaagaatctcccaaaccatattcc |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | | |
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| T |
5355970 |
attccattctccatcacattctctccttattagacaccaaacaagcttttcaaacttccatactctccactagatggaagaatctcccaaaacatctctc |
5356069 |
T |
|
| Q |
118 |
aacccttagattaagttctccagtctttaactctttcgacagtttcgcaaaatcagtttgtctgattttatctcatcgcgactatttaacttctctccac |
217 |
Q |
| |
|
|||||||||||||||||| |||||||| ||||||| ||||||||| |||||||| | || |||||||||||||||||| ||||||||||||||||| |
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| T |
5356070 |
aacccttagattaagttccacagtcttttactcttttgacagtttcatgaaatcagtctctcggattttatctcatcgcgatgatttaacttctctccac |
5356169 |
T |
|
| Q |
218 |
actctagatctttaccaccgcc---cacatgatttcgatttcgtgtgccctgacatactcaaaagcattgt |
285 |
Q |
| |
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|||||||||||||| |||||| ||||| |||||||||||||| |||||||||| ||||||||||||| |
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|
| T |
5356170 |
actctagatctttataaccgccacacacattatttcgatttcgtggaccctgacatattcaaaagcattgt |
5356240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 18 - 378
Target Start/End: Original strand, 5367618 - 5367969
Alignment:
| Q |
18 |
attccattctccatcacattctctccttattagacaccaaacaagcttttcaaacttccatactctccactagatggaagaatctcccaaaccatattcc |
117 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |
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|
| T |
5367618 |
attcgattctccatcacattctctccttattagacaccaaacaagcttttcaaacttccatactctccactagatggaagaatctcccaaaccatctacc |
5367717 |
T |
|
| Q |
118 |
aacccttagattaagttctccagtctttaactctttcgacagtttcgcaaaatcagtttgtctgattttatctcatcgcgactatttaacttctctccac |
217 |
Q |
| |
|
|||||||||||||||||| | | |||||||||||| ||| ||||| ||||| | || ||||| |||| |||||| ||| |||| | |||||| |
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| T |
5367718 |
aacccttagattaagttccacgggctttaactcttttgactgtttcatcaaatcgctgactcaaattttgtctcttcgcgatgattcaactgccctccac |
5367817 |
T |
|
| Q |
218 |
actctagatctttaccaccgcccacatgatttcgatttcgtgtgccctgacatactcaaaagcattgtatactatactgttacacataatgtccagcgag |
317 |
Q |
| |
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| ||||||| ||| |||||||||| ||||| ||| |||| | |||||| ||||||| ||| | || | || ||||||||||||||| | |
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| T |
5367818 |
agtctagattttt---accgcccaca------ggattttgtggaccctaaaatactcgaaagcatggtaaattacgccatttcacataatgtccagctac |
5367908 |
T |
|
| Q |
318 |
tacgaatctgtgtcacttgtaatattcaacaacttccgtcttgcttattttcatctcaaac |
378 |
Q |
| |
|
||||||||| ||||| |||| ||||||||||||||| |||| ||||||||||||||||||| |
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|
| T |
5367909 |
tacgaatctctgtcagttgtgatattcaacaacttcagtctagcttattttcatctcaaac |
5367969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 18 - 378
Target Start/End: Original strand, 5362402 - 5362753
Alignment:
| Q |
18 |
attccattctccatcacattctctccttattagacaccaaacaagcttttcaaacttccatactctccactagatggaagaatctcccaaaccatattcc |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| ||||||||||| ||||||||||||| |||||||||||||| |
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|
| T |
5362402 |
attccattctccatcacattctctccttattggacaccaaagaagcttttcaaacttgcatactctccaaacgatggaagaatctaccaaaccatattcc |
5362501 |
T |
|
| Q |
118 |
aacccttagattaagttctccagtctttaactctttcgacagtttcgcaaaatcagtttgtctgattttatctcatcgcgactatttaacttctctccac |
217 |
Q |
| |
|
||| |||||||||||||| | | |||||||||||| ||| ||||| |||| | || ||||| |||| |||||| ||| |||| | |||||| |
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|
| T |
5362502 |
aactcttagattaagttccacgggctttaactcttttgactgtttcatcaaattgctgactcaaattttgtctcttcgcgatgattcaactgccctccac |
5362601 |
T |
|
| Q |
218 |
actctagatctttaccaccgcccacatgatttcgatttcgtgtgccctgacatactcaaaagcattgtatactatactgttacacataatgtccagcgag |
317 |
Q |
| |
|
| ||||||| ||| |||||||||| ||||||||| |||||| |||||| ||||||| ||| | || | || ||||||||||||||| | |
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|
| T |
5362602 |
agtctagattttt---accgcccaca------ggatttcgtggaccctgaaatactcgaaagcatggtaaattacgccatttcacataatgtccagctat |
5362692 |
T |
|
| Q |
318 |
tacgaatctgtgtcacttgtaatattcaacaacttccgtcttgcttattttcatctcaaac |
378 |
Q |
| |
|
||||||||| ||||| |||| ||||||||||||||| |||| ||||||||||||||||||| |
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| T |
5362693 |
tacgaatctctgtcagttgtgatattcaacaacttcagtctagcttattttcatctcaaac |
5362753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 174
Target Start/End: Complemental strand, 8400589 - 8400433
Alignment:
| Q |
18 |
attccattctccatcacattctctccttattagacaccaaacaagcttttcaaacttccatactctccactagatggaagaatctcccaaaccatattcc |
117 |
Q |
| |
|
|||||||| ||||||||||||||||||| || | |||||| ||| ||||||||||| ||||||| || ||||||| ||||| |||| ||| |||| |
|
|
| T |
8400589 |
attccattatccatcacattctctccttcttgaaaaccaaagaagtttttcaaacttgtgtactctcaacaagatggatccatctcacaaaacatcttcc |
8400490 |
T |
|
| Q |
118 |
aacccttagattaagttctccagtctttaactctttcgacagtttcgcaaaatcagt |
174 |
Q |
| |
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| ||||| |||| |||| | ||||| ||||| |||||||||| | |||||||| |
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|
| T |
8400489 |
attccttaaattatgttccgaaagctttacctcttccgacagtttcaccaaatcagt |
8400433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 18 - 131
Target Start/End: Complemental strand, 30055295 - 30055182
Alignment:
| Q |
18 |
attccattctccatcacattctctccttattagacaccaaacaagcttttcaaacttccatactctccactagatggaagaatctcccaaaccatattcc |
117 |
Q |
| |
|
|||||||| ||||| |||||||||| || || |||| ||| ||||||||||||||| ||||||||| || |||||||| ||||| |||| ||| |||| |
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| T |
30055295 |
attccattatccatgacattctctcattcttgaacactaaagaagcttttcaaacttgcatactctcaacaagatggaactatctcacaaagcatcttcc |
30055196 |
T |
|
| Q |
118 |
aacccttagattaa |
131 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
30055195 |
aacccttagattaa |
30055182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 341 - 379
Target Start/End: Complemental strand, 30055021 - 30054983
Alignment:
| Q |
341 |
attcaacaacttccgtcttgcttattttcatctcaaact |
379 |
Q |
| |
|
||||| |||||||| |||||||||||||||||||||||| |
|
|
| T |
30055021 |
attcaccaacttccatcttgcttattttcatctcaaact |
30054983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 131
Target Start/End: Complemental strand, 27701991 - 27701882
Alignment:
| Q |
22 |
cattctccatcacattctctccttattagacaccaaacaagcttttcaaacttccatactctccactagatggaagaatctcccaaaccatattccaacc |
121 |
Q |
| |
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||||||| |||||| ||||||| ||||| |||||||| || |||||||| |||| || ||||| |||||||| |||||| || | | |||||||| |
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| T |
27701991 |
cattctctttcacatactctcctctttagaaaccaaacatgccgttcaaactaccattctttccacaagatggaacaatctctggaaacgtcttccaacc |
27701892 |
T |
|
| Q |
122 |
cttagattaa |
131 |
Q |
| |
|
|||||||||| |
|
|
| T |
27701891 |
cttagattaa |
27701882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 54 - 103
Target Start/End: Complemental strand, 28928513 - 28928464
Alignment:
| Q |
54 |
ccaaacaagcttttcaaacttccatactctccactagatggaagaatctc |
103 |
Q |
| |
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||||| ||||| ||||||||| ||||||||||||| |||||||||||||| |
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| T |
28928513 |
ccaaagaagctgttcaaacttgcatactctccactcgatggaagaatctc |
28928464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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