View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2978_low_6 (Length: 371)
Name: NF2978_low_6
Description: NF2978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2978_low_6 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 25 - 354
Target Start/End: Original strand, 11782896 - 11783225
Alignment:
| Q |
25 |
acattaacactagcacaacccttatgcactaggtctgttgatctacctcaagatctaacggaggaccataccgcatcctcctccaagaaaaccagaggta |
124 |
Q |
| |
|
||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11782896 |
acattaacactggcacaacccttatgcgataggtctgttgatctacctcaagatctaacggaggaccataccgcatcctcctccaagaaaaccagaggta |
11782995 |
T |
|
| Q |
125 |
gacccaaaggtgctaagaataagcctaaacctatatccatcgttactaatgaaaataccgatgacatcctaatggaaccatttcttatcgaggtccctat |
224 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11782996 |
gacccaaaggcgctaagaataagcctaaacctgtatccatcgttactaatgaaaataccgatgacatcctaatggaaccatttcttatcgaggtccctat |
11783095 |
T |
|
| Q |
225 |
tggaaaagatgttatggagactctcatcaacttggctcgtagtcagcaagctggaataaccgtgttgagcggttttggtcttgtttctgatgttacactt |
324 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
11783096 |
tggaaaagatgttatggagactctcatcaacttagctcgtagtcaacaagctggaataaccgtgttgagtggttttggtcttgtttctgatgttacactt |
11783195 |
T |
|
| Q |
325 |
cttgaaccgatgccttgtacccctgctttc |
354 |
Q |
| |
|
|||||| |||||||||| |||||||||||| |
|
|
| T |
11783196 |
cttgaatcgatgccttgcacccctgctttc |
11783225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University