View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2979_high_1 (Length: 742)
Name: NF2979_high_1
Description: NF2979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2979_high_1 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 596; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 596; E-Value: 0
Query Start/End: Original strand, 14 - 724
Target Start/End: Original strand, 12746637 - 12747360
Alignment:
| Q |
14 |
atatagggcaacccggcctctgcacaaataatgaacaaatacgtggacaaagggtctccttgatgcaaacctttcccaggaataactggcccaaccgatt |
113 |
Q |
| |
|
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
12746637 |
atatagggctacccgacctctgcacaaataatgaacaaatacgtggacaaagggtctccttgatgcaaacctttcccgggaataactggcccaaccgatt |
12746736 |
T |
|
| Q |
114 |
cattgttgaccaacgtagaatagtcaattgacaccacgcacatattcatccaatgtatccatttatcattaaagcccattttcatcatcattcaaaaaat |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
12746737 |
cattgttgaccaacgtagaatagtcaattggcaccacgcacatattcatccaatgtatccatttatcattaaagctcattttcatcatcattcaaaaaat |
12746836 |
T |
|
| Q |
214 |
ctcagtcgatacgatcatacgctttactagtgtc-------------gcacatccctcattaccacgagtctttgttttcatgtgatggatgacttctat |
300 |
Q |
| |
|
|||||||||||||||||||| ||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
12746837 |
ttcagtcgatacgatcatacgttttactaatgtccagttttagcgtcgcacatccctcattaccacgagtctttgttttcatgtgatggatgacttctat |
12746936 |
T |
|
| Q |
301 |
tgcagccttggtgttatcaagaattgacctcctaggtacaaaggttgattgattatcagagattcactgtgggagaataagcttcaacttatttgcaaga |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
12746937 |
tgcagccttggtgttatcaagaattgacctcctaggtacaaaggttgattgattatcagagattcactgtgggagaataagcttcaacttatttgcgaga |
12747036 |
T |
|
| Q |
401 |
accttagagatcaatttatagagaacattacataaagctatcggcttacaatctttcatcgtagtccgagaaatgcctttagggatgagatcaatgtttg |
500 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
12747037 |
accttagagatcaatttatagagaacattacataaagctatcggcttacaatcttccatcgtagtccgagaattgcctttagggatgagatcaatgtttg |
12747136 |
T |
|
| Q |
501 |
tcatattgatagaagctagagattgacctgtatctaaccatgcacaacattgttagaacttggaatatctcatcactacataaattccaaaattaatgat |
600 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
12747137 |
tcatattaatagaagctagagattgacctgtatctaaccatgcacaacattgttggaacttggaatatctcatcactacataaatttcaaaattaatgat |
12747236 |
T |
|
| Q |
601 |
aaaaacatggtttataaccatccggatcaagacatttgcgagggtgcaaagagaacatcgtcgcacgaaattcctctttggtaaaaggcatcgttaaaag |
700 |
Q |
| |
|
|||||| ||| ||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| |||||||||||||||||| | |||||||| |
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|
| T |
12747237 |
aaaaacctggattataaccatccggatcaagacatttgtgagggtgcaaagagaacaacgtcgcacgaaactcctctttggtaaaaggcgttgttaaaag |
12747336 |
T |
|
| Q |
701 |
catgttgtcatcactagtaattgt |
724 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
12747337 |
catgttgtcatcactagtaattgt |
12747360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 596; E-Value: 0
Query Start/End: Original strand, 14 - 724
Target Start/End: Original strand, 12809721 - 12810444
Alignment:
| Q |
14 |
atatagggcaacccggcctctgcacaaataatgaacaaatacgtggacaaagggtctccttgatgcaaacctttcccaggaataactggcccaaccgatt |
113 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12809721 |
atatagggctacccggcctctgcacaaataatgaacaaatacgtggacaaagggtctccttgatgcaaacctttcccaggaataactggcccaaccgatt |
12809820 |
T |
|
| Q |
114 |
cattgttgaccaacgtagaatagtcaattgacaccacgcacatattcatccaatgtatccatttatcattaaagcccattttcatcatcattcaaaaaat |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
12809821 |
cattgttgaccaacgtagaatagtcaattggcaccacgcacatattcatccaatgtatccatttatcattaaagctcattttcatcatcattcaaaaaat |
12809920 |
T |
|
| Q |
214 |
ctcagtcgatacgatcatacgctttactagtgtc-------------gcacatccctcattaccacgagtctttgttttcatgtgatggatgacttctat |
300 |
Q |
| |
|
||||||||||| ||||||||||||| || |||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12809921 |
ttcagtcgatacaatcatacgctttattaatgtccagttttagcgtcgtacatccctcattaccacgagtctttgttttcatgtgatggatgacttctat |
12810020 |
T |
|
| Q |
301 |
tgcagccttggtgttatcaagaattgacctcctaggtacaaaggttgattgattatcagagattcactgtgggagaataagcttcaacttatttgcaaga |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
12810021 |
tgcagccttggtgttatcaagaattgacctcctaggtacaaaggttgattgattatcagagattcactgtgggagaataagcttcaacttatttgcgaga |
12810120 |
T |
|
| Q |
401 |
accttagagatcaatttatagagaacattacataaagctatcggcttacaatctttcatcgtagtccgagaaatgcctttagggatgagatcaatgtttg |
500 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
12810121 |
accttagagatcaatttatagagaacattacataaagctatcggcttacaatcttccatcgtagtccgagaattgcctttagggatgagatcaatgtttg |
12810220 |
T |
|
| Q |
501 |
tcatattgatagaagctagagattgacctgtatctaaccatgcacaacattgttagaacttggaatatctcatcactacataaattccaaaattaatgat |
600 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| ||||||||||||| |
|
|
| T |
12810221 |
tcatattaatagaagctagagattgacctgtatctaaccatgcacaacattgttggaacttggaatatctcatcactatataaatttcaaaattaatgat |
12810320 |
T |
|
| Q |
601 |
aaaaacatggtttataaccatccggatcaagacatttgcgagggtgcaaagagaacatcgtcgcacgaaattcctctttggtaaaaggcatcgttaaaag |
700 |
Q |
| |
|
|||||| ||| ||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| |||||||||||||||||| |||||||||| |
|
|
| T |
12810321 |
aaaaacctggattataaccatccggatcaagacatttgtgagggtgcaaagagaacaacgtcgcacgaaactcctctttggtaaaaggcgtcgttaaaag |
12810420 |
T |
|
| Q |
701 |
catgttgtcatcactagtaattgt |
724 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
12810421 |
catgttgtcatcactagtaattgt |
12810444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 95 - 201
Target Start/End: Original strand, 17660525 - 17660631
Alignment:
| Q |
95 |
ataactggcccaaccgattcattgttgaccaacgtagaatagtcaattgacaccacgcacatattcatccaatgtatccatttatcattaaagcccattt |
194 |
Q |
| |
|
|||||||||||||| ||||||||| |||||| | ||||||| | ||| ||| ||||| |||||||||| |||||||| |||| ||||||||||| |
|
|
| T |
17660525 |
ataactggcccaacaacttcattgttaaccaacacataatagtctacagactccagacacatgctcatccaatgaatccatttgtcatcaaagcccattt |
17660624 |
T |
|
| Q |
195 |
tcatcat |
201 |
Q |
| |
|
| ||||| |
|
|
| T |
17660625 |
taatcat |
17660631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 170; Significance: 8e-91; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 170; E-Value: 8e-91
Query Start/End: Original strand, 30 - 554
Target Start/End: Original strand, 21976939 - 21977481
Alignment:
| Q |
30 |
cctctgcacaaataatgaacaaatacgtggacaaagggtctccttgatgcaaacctttcccaggaataactggcccaaccgattcattgttgaccaacgt |
129 |
Q |
| |
|
|||| |||||||||||||| ||||||| ||| ||||||||| ||||| |||||||| | ||||||||||||||||| || |||||| ||||||||||| |
|
|
| T |
21976939 |
cctccgcacaaataatgaaaaaatacggggataaagggtctacttgacgcaaacctcttccaggaataactggccccactaattcatagttgaccaacgc |
21977038 |
T |
|
| Q |
130 |
agaatagtcaattgacaccacgcacatattcatccaatgtatccatttatcattaaagcccattttcatcatca-----ttcaaaaaatctcagtcgata |
224 |
Q |
| |
|
||| || |||| ||| || |||||| |||| |||||||||||| |||||||| | ||| |||||| ||||| |||||||| || ||||||||| |
|
|
| T |
21977039 |
agagtaatcaaccgacttaacacacatactcattcaatgtatccatctatcattataaccccttttcagcatcacctgcttcaaaaattcccagtcgata |
21977138 |
T |
|
| Q |
225 |
cgatcatacgctttac-------tagtgtcg------cacatccctcattaccacgagtctttgttttcatgtgatggatgacttctattgcagccttgg |
311 |
Q |
| |
|
|||||||| ||| ||| |||| || |||| |||||| || || ||||||||||||||||||||||||||||||||||| | || || |
|
|
| T |
21977139 |
cgatcatatgctatacctatatctagtttcaatgccacacacccctcacaacaacaagtctttgttttcatgtgatggatgacttctattgtaaccatga |
21977238 |
T |
|
| Q |
312 |
tgttatcaagaattgacctcctaggtacaaaggttgattgattatcagagattcactgtgggagaataagcttcaacttatttgcaagaaccttagagat |
411 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||| |||||||||||||| ||||||||| ||||||||||||| ||||||| |||||||||||||| |
|
|
| T |
21977239 |
cattatcaagaattgacctcctaggtacaaaggctgactgattatcagagatacactgtgggtgaataagcttcaatctatttgcgagaaccttagagat |
21977338 |
T |
|
| Q |
412 |
caatttatagagaacattacataaagctatcggcttacaatctttcatcgtagtccgagaaatgcctttagggatgagatcaatgtttgtcatattgata |
511 |
Q |
| |
|
| |||| |||||||||||||||| ||||| | | ||||||||||| ||||| ||||| | ||||| ||||||||| |||||||||||| ||| | | |
|
|
| T |
21977339 |
ccatttgtagagaacattacatagggctattgaccgtcaatctttcattgtagtatgagaattaccttttgggatgagagcaatgtttgtcagattaaga |
21977438 |
T |
|
| Q |
512 |
gaagctagagattgacctgtatctaaccatgcacaacattgtt |
554 |
Q |
| |
|
|||||| || ||||| |||||| ||||||||||||||||||| |
|
|
| T |
21977439 |
gaagctggaagttgacatgtatcgaaccatgcacaacattgtt |
21977481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 2e-17; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 30 - 196
Target Start/End: Original strand, 24410470 - 24410636
Alignment:
| Q |
30 |
cctctgcacaaataatgaacaaatacgtggacaaagggtctccttgatgcaaacctttcccaggaataactggcccaaccgattcattgttgaccaacgt |
129 |
Q |
| |
|
|||| |||||||||||||||||||||| ||||| | ||||||| | |||||| | || |||||||| || | | |||||||||||||||||| | |
|
|
| T |
24410470 |
cctccgcacaaataatgaacaaatacggggacatcgactctccttaacataaacctcgcacaagaataactaacctagctgattcattgttgaccaacat |
24410569 |
T |
|
| Q |
130 |
agaatagtcaattgacaccacgcacatattcatccaatgtatccatttatcattaaagcccattttc |
196 |
Q |
| |
|
||| ||||||| ||| ||||||| ||| ||||||| ||||||||| |||||||||| | ||||||| |
|
|
| T |
24410570 |
agagtagtcaaccgactccacgcagatactcatccattgtatccatctatcattaaaactcattttc |
24410636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 95 - 201
Target Start/End: Complemental strand, 14688277 - 14688171
Alignment:
| Q |
95 |
ataactggcccaaccgattcattgttgaccaacgtagaatagtcaattgacaccacgcacatattcatccaatgtatccatttatcattaaagcccattt |
194 |
Q |
| |
|
|||||||||||||| ||||||||| |||||| | ||||||| | ||| ||| ||||| |||||||||| |||||||| |||| ||||||||||| |
|
|
| T |
14688277 |
ataactggcccaacaacttcattgttaaccaacacataatagtctacagactccaaacacatgctcatccaatggatccatttgtcatcaaagcccattt |
14688178 |
T |
|
| Q |
195 |
tcatcat |
201 |
Q |
| |
|
| ||||| |
|
|
| T |
14688177 |
taatcat |
14688171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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