View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2979_high_7 (Length: 234)
Name: NF2979_high_7
Description: NF2979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2979_high_7 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 23212250 - 23212029
Alignment:
| Q |
1 |
ccttgtttttgtcaatgttttttataattgatttggttgagggataaccatttgtactaatactagtgtcaaaaattggtatgctacctttattagggag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23212250 |
ccttgtttttgtcaatgttttttataattgttttggttgagggagaaccatttgtactaatactagtgtcaaaaattggtatgctacctttattagggag |
23212151 |
T |
|
| Q |
101 |
tattttgttatttggttttgagaaaggaatgttagtggtttgttgtgtgttgacaattatgccattcataattctttctgatgggtttgatccacctaga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23212150 |
tattttgttatttggttttgagaaaggaatgttagtggtttgttgtgtgttgacaattatgccattcataattctttctgatgggtttgatccacctaga |
23212051 |
T |
|
| Q |
201 |
atgtcatgcatgtagaaagtga |
222 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
23212050 |
atgtcatgcatgtagaaagtga |
23212029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University