View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2979_low_12 (Length: 258)
Name: NF2979_low_12
Description: NF2979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2979_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 42453082 - 42452833
Alignment:
| Q |
1 |
ccatttctgatagactgattctcaccttccctatccttgtatcgtttgctccagcagctatatattcttcatgtaattgactattatcaaacacagaaat |
100 |
Q |
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| T |
42453082 |
ccatttctgatagactgattctcaccttccctatccttgtatcgtttgctccagcagctatatattcttcatgtaattgactattatcaaacacagaaat |
42452983 |
T |
|
| Q |
101 |
aatgaaaaatgtagatggatcatagaccttccaagagtattgctcattccactttggagaaagactattaacaacagttcttgaccgaacccattttgag |
200 |
Q |
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| T |
42452982 |
aatgaaaaatgtagatggatcatagaccttccaagagtattgctcattccactttggagaaagactattaacaacagttcttgaccgaacccattttgag |
42452883 |
T |
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| Q |
201 |
ccatatttagctacacaataggcatcggtgcgaccttgaggtttcatctc |
250 |
Q |
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| T |
42452882 |
ccatatttagctacacaataggcatcggtgcgaccttgaggtttcatctc |
42452833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 117 - 229
Target Start/End: Original strand, 27253643 - 27253755
Alignment:
| Q |
117 |
ggatcatagaccttccaagagtattgctcattccactttggagaaagactattaacaacagttcttgaccgaacccattttgagccatatttagctacac |
216 |
Q |
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| T |
27253643 |
ggatcataaacttcccaagtatattgctcattccaccttggtgaaagactatcaacaatagtccttgttctcacccatttagaaccatacttagctacac |
27253742 |
T |
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| Q |
217 |
aataggcatcggt |
229 |
Q |
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| T |
27253743 |
aatatgcgtcggt |
27253755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 117 - 229
Target Start/End: Original strand, 21197801 - 21197913
Alignment:
| Q |
117 |
ggatcatagaccttccaagagtattgctcattccactttggagaaagactattaacaacagttcttgaccgaacccattttgagccatatttagctacac |
216 |
Q |
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| T |
21197801 |
ggatcataaacttcccaagtatattgctcattccaccttggtgaaagaatatcaacaatagtccttgttctcacccatttagaaccatacttagctacac |
21197900 |
T |
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| Q |
217 |
aataggcatcggt |
229 |
Q |
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|||| || ||||| |
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| T |
21197901 |
aatatgcgtcggt |
21197913 |
T |
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