View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2979_low_13 (Length: 243)
Name: NF2979_low_13
Description: NF2979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2979_low_13 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 20 - 243
Target Start/End: Complemental strand, 42453542 - 42453319
Alignment:
| Q |
20 |
tgaggcagaaagaacaagacgacgagcaacaagtgagctataattggtgaaacaagatctttccacttgcgtacgtcatcaaaataagtgtaaataccaa |
119 |
Q |
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| T |
42453542 |
tgaggcagaaagaacaagacgacgagcaacaagtgagctataattggtgaaacaagatctttccacttgcgtacgtcatcaaaataagtgtaaataccaa |
42453443 |
T |
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| Q |
120 |
ccaagcaatttagaaagacgttgatcctctcaaaatcagctttacatcttctcatactccacacgatttcacgtgaatctagcatataatcaacaacctc |
219 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42453442 |
ccaagcaatttagaaagacgttaatcctctcaaaatcagctttacatcttctcatactccacacgatttcacgtgaatctagcatataatcaacaacctc |
42453343 |
T |
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| Q |
220 |
atttctcaacggcggttcagcttt |
243 |
Q |
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|||||||||||||||||||||||| |
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| T |
42453342 |
atttctcaacggcggttcagcttt |
42453319 |
T |
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