View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2979_low_17 (Length: 227)

Name: NF2979_low_17
Description: NF2979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2979_low_17
NF2979_low_17
[»] chr7 (2 HSPs)
chr7 (18-211)||(44501460-44501653)
chr7 (19-87)||(32413624-32413692)
[»] chr3 (3 HSPs)
chr3 (35-110)||(45870518-45870593)
chr3 (24-108)||(45856907-45856991)
chr3 (31-89)||(778229-778287)
[»] chr2 (1 HSPs)
chr2 (31-86)||(43864081-43864136)
[»] chr5 (3 HSPs)
chr5 (19-96)||(7894982-7895058)
chr5 (65-110)||(38142202-38142247)
chr5 (58-110)||(7976853-7976905)
[»] chr6 (3 HSPs)
chr6 (20-108)||(33844301-33844389)
chr6 (31-87)||(7140758-7140814)
chr6 (31-87)||(8680372-8680428)


Alignment Details
Target: chr7 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 18 - 211
Target Start/End: Original strand, 44501460 - 44501653
Alignment:
Q  18 ccttccatctgggggacaaaatgcaagtctgaacagcgtttttggcattcaaaaaagacagtatgtgaaggataatgcagtcaggtaagtcgccaagtca 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  44501460 ccttccatctgggggacaaaatgcaagtctgaacagcgtttttggcattcaaaaaagacagtatgtgaaggataatgcagtcaggtaagtcgccaagtcg 44501559  T
Q  118 gtctttacttacactctcagtgagttttaatttcttctttgtcggtcgaattattatctcacttgacattctgataagaacctaatcatggaac 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  44501560 gtctttacttacactctcagtgagttttaatttcttctttgtcggtcgaattattatctcacttgacattctgataagtacctaatcatggaac 44501653  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 87
Target Start/End: Complemental strand, 32413692 - 32413624
Alignment:
Q  19 cttccatctgggggacaaaatgcaagtctgaacagcgtttttggcattcaaaaaagacagtatgtgaag 87  Q
    ||||||||| | ||||||||||||||| ||||| |||| |||||  |||||| | || |||||||||||    
T  32413692 cttccatcttgtggacaaaatgcaagtttgaacggcgtgtttggtgttcaaagaggagagtatgtgaag 32413624  T

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Target: chr3 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 35 - 110
Target Start/End: Original strand, 45870518 - 45870593
Alignment:
Q  35 aaaatgcaagtctgaacagcgtttttggcattcaaaaaagacagtatgtgaaggataatgcagtcaggtaagtcgc 110  Q
    |||| |||||| ||||| |||| |||||||||| |||| |||||||||||||||||||  |||||||||| |||||    
T  45870518 aaaacgcaagtttgaactgcgtctttggcattcgaaaacgacagtatgtgaaggataacacagtcaggtaggtcgc 45870593  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 108
Target Start/End: Original strand, 45856907 - 45856991
Alignment:
Q  24 atctgggggacaaaatgcaagtctgaacagcgtttttggcattcaaaaaagacagtatgtgaaggataatgcagtcaggtaagtc 108  Q
    |||| |||||||||||||||||   ||| |||| ||| || |||| ||||||||||||||| ||||||||  ||||| |||||||    
T  45856907 atcttggggacaaaatgcaagttccaaccgcgtctttagcgttcagaaaagacagtatgtggaggataatatagtcatgtaagtc 45856991  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 89
Target Start/End: Original strand, 778229 - 778287
Alignment:
Q  31 ggacaaaatgcaagtctgaacagcgtttttggcattcaaaaaagacagtatgtgaagga 89  Q
    ||||||||||||||| || || || | |||||| ||||||||||| |||||||||||||    
T  778229 ggacaaaatgcaagtttggactgcctctttggctttcaaaaaagatagtatgtgaagga 778287  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 31 - 86
Target Start/End: Original strand, 43864081 - 43864136
Alignment:
Q  31 ggacaaaatgcaagtctgaacagcgtttttggcattcaaaaaagacagtatgtgaa 86  Q
    ||||||||||||||| ||||| || ||||| ||||||||||| |||||||||||||    
T  43864081 ggacaaaatgcaagtttgaacggccttttttgcattcaaaaaggacagtatgtgaa 43864136  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 96
Target Start/End: Complemental strand, 7895058 - 7894982
Alignment:
Q  19 cttccatctgggggacaaaatgcaagtctgaacagcgtttttggcattcaaaaaagacagtatgtgaaggataatgca 96  Q
    ||||||||||   |||||||||||||| ||||| || | ||||||||||||||| || || |||||||||||||||||    
T  7895058 cttccatctgatagacaaaatgcaagt-tgaacggcttgtttggcattcaaaaaggaaagaatgtgaaggataatgca 7894982  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 65 - 110
Target Start/End: Original strand, 38142202 - 38142247
Alignment:
Q  65 ttcaaaaaagacagtatgtgaaggataatgcagtcaggtaagtcgc 110  Q
    |||||||| || ||||||||||||||||  ||||||||||||||||    
T  38142202 ttcaaaaaggagagtatgtgaaggataacacagtcaggtaagtcgc 38142247  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 110
Target Start/End: Original strand, 7976853 - 7976905
Alignment:
Q  58 tttggcattcaaaaaagacagtatgtgaaggataatgcagtcaggtaagtcgc 110  Q
    |||||| |||||||| || || ||||||||||||||||| || ||||||||||    
T  7976853 tttggcgttcaaaaaggagagaatgtgaaggataatgcattcgggtaagtcgc 7976905  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 108
Target Start/End: Original strand, 33844301 - 33844389
Alignment:
Q  20 ttccatctgggggacaaaatgcaagtctgaacagcgtttttggcattcaaaaaagacagtatgtgaaggataatgcagtcaggtaagtc 108  Q
    |||||||||| ||||||||||||||| ||||| ||||||| ||  |||||||| ||||  |||| ||  | ||||||||| ||||||||    
T  33844301 ttccatctggtggacaaaatgcaagtttgaacggcgttttcggttttcaaaaatgacaaaatgtaaataagaatgcagtcgggtaagtc 33844389  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 87
Target Start/End: Original strand, 7140758 - 7140814
Alignment:
Q  31 ggacaaaatgcaagtctgaacagcgtttttggcattcaaaaaagacagtatgtgaag 87  Q
    ||||||||| ||||| ||||| |||| ||| | |||||||||||| |||||||||||    
T  7140758 ggacaaaatacaagtttgaactgcgtatttagtattcaaaaaagagagtatgtgaag 7140814  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 87
Target Start/End: Original strand, 8680372 - 8680428
Alignment:
Q  31 ggacaaaatgcaagtctgaacagcgtttttggcattcaaaaaagacagtatgtgaag 87  Q
    ||||||||| ||||| ||||| |||| ||| | |||||||||||| |||||||||||    
T  8680372 ggacaaaatacaagtttgaactgcgtatttagtattcaaaaaagagagtatgtgaag 8680428  T

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