View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2979_low_2 (Length: 393)
Name: NF2979_low_2
Description: NF2979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2979_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 363; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 1 - 387
Target Start/End: Original strand, 47304704 - 47305090
Alignment:
| Q |
1 |
tgtgttgctgggaaagataaacttagggagagaggggtttggtattatgagcttatgaagaagagtggttggaaagggaaattggagttgttcgaagaag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47304704 |
tgtgttgctgggaaagataaacttagggagagaggggtttggtattatgagcttataaagaagagtggttggaaagggaaattggagttgttcgaagaag |
47304803 |
T |
|
| Q |
101 |
aagatgaagatcatgtttatcatatatttcatcctgaatctgagagtggtcagaaattgatcaagcatttggcttcctttcttcatgagtaaggaaatgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47304804 |
aagatgaagatcatgtttatcatatatttcatcctgaatctgagagtggtcagaaattgatcaagcatttggcttcctttcttcatgagtaaggaaatgt |
47304903 |
T |
|
| Q |
201 |
ttttcctttatgtgtttgtgttgtactgttttagattacaatagtagcaatcatcatgagatgttgtgtttgtgctactaattactattactaataataa |
300 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
47304904 |
ttttcctttatgtgtttgtgttgtactgttttagattgcaatagtagcaatcatcatgagatgttgtgtttgtgttactaattactattactaataataa |
47305003 |
T |
|
| Q |
301 |
tgatttcttgtgatcatgtacttgtgagttaattagtaagtgtattgtgtatttataaagtttattacctactcattttcttctcac |
387 |
Q |
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| T |
47305004 |
tgatttcttgtgatcatgtacttgtgagttaattagtaagtgtattgtgtaattataaagtttattacctactcgttttcttttcac |
47305090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 367
Target Start/End: Original strand, 47301818 - 47302181
Alignment:
| Q |
1 |
tgtgttgctgggaaagataaacttagggagagaggggtttggtattatgagcttatgaagaagagtggttggaaagggaaattggagttgttcgaagaag |
100 |
Q |
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| T |
47301818 |
tgtgttgctgggaaagatggaattagggagagaggggtttggtattatgagcttgtgaagaagagtggttggaaagggaaattggaattgtttgaagaag |
47301917 |
T |
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| Q |
101 |
aagatgaagatcatgtttatcatatatttcatcctgaatctgagagtggtcagaaattgatcaagcatttggcttcctttcttcatgagtaaggaaatgt |
200 |
Q |
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| T |
47301918 |
aagatgaagatcatgtttatcatatctttcatcctgaatctgagagtggtcaaaaattgatcaagcatttggcttcctttcttcatgagtaaggaaatgt |
47302017 |
T |
|
| Q |
201 |
ttttcctttatgtgtttgtgttgtactgttttagattacaatagtagcaatcatcatgagatgttgtgtttgtgctactaattactattactaataataa |
300 |
Q |
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| T |
47302018 |
ttttcctttatgtgtttgtgttgtactgttttagattgcaatagtagcaatcatcatgagatgtt---tttgtgttactaattactattactaataataa |
47302114 |
T |
|
| Q |
301 |
tgatttcttgtgatcatgtacttgtgagttaattagtaagtgtattgtgtatttataaagtttatta |
367 |
Q |
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| T |
47302115 |
ttatttcttgtgatcatgtacttgtgagttaattagtaagtgtattgtgtaattataaagttcatta |
47302181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 155; Significance: 3e-82; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 17841955 - 17842161
Alignment:
| Q |
1 |
tgtgttgctgggaaagataaacttagggagagaggggtttggtattatgagcttatgaagaagagtggttggaaagggaaattggagttgttcgaagaag |
100 |
Q |
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|||||||||||||||||| | | |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| ||||||| |
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| T |
17841955 |
tgtgttgctgggaaagatggattaagggagagaggggtttggtattatgagcttgtgaagaagagtggttggaaagggaaattggaattgtttgaagaag |
17842054 |
T |
|
| Q |
101 |
aagatgaagatcatgtttatcatatatttcatcctgaatctgagagtggtcagaaattgatcaagcatttggcttcctttcttcatgagtaaggaaatgt |
200 |
Q |
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| T |
17842055 |
aaaatgaagaccatgtttatcatatctttcatcctgaatctgagagtgctcataaattgatcaagcatttggcttcctttcttcatgagtaaggaaatat |
17842154 |
T |
|
| Q |
201 |
ttttcct |
207 |
Q |
| |
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||||||| |
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| T |
17842155 |
ttttcct |
17842161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 15233852 - 15233731
Alignment:
| Q |
1 |
tgtgttgctgggaaagataaacttagggagagaggggtttggtattatgagcttatgaagaagagtggttggaaagggaaattggagttgttcgaagaag |
100 |
Q |
| |
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||||||||||| |||||||| | ||||||||||| |||||||||| || | ||||||| ||||| ||||||||||||||||| || || ||||| |
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| T |
15233852 |
tgtgttgctggaaaagataagttaagggagagaggagtttggtattgggaaggtgtgaagaatagtgggtggaaagggaaattggaattctttgaagaga |
15233753 |
T |
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| Q |
101 |
aagatgaagatcatgtttatca |
122 |
Q |
| |
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||||||| | |||||||||||| |
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| T |
15233752 |
aagatgagggtcatgtttatca |
15233731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 56 - 120
Target Start/End: Original strand, 673546 - 673610
Alignment:
| Q |
56 |
tgaagaagagtggttggaaagggaaattggagttgttcgaagaagaagatgaagatcatgtttat |
120 |
Q |
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||||||||||||| ||||||||| || |||| || || ||||| ||||||| |||||||||||| |
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| T |
673546 |
tgaagaagagtggatggaaaggggaagtggaattctttgaagagaaagatgaggatcatgtttat |
673610 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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