View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2979_low_6 (Length: 319)

Name: NF2979_low_6
Description: NF2979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2979_low_6
NF2979_low_6
[»] chr4 (7 HSPs)
chr4 (1-307)||(44938731-44939036)
chr4 (53-131)||(29375969-29376048)
chr4 (43-140)||(2996629-2996727)
chr4 (43-84)||(37863927-37863968)
chr4 (4-32)||(25309555-25309583)
chr4 (41-136)||(32831438-32831534)
chr4 (92-140)||(47146050-47146098)
[»] chr5 (5 HSPs)
chr5 (45-143)||(17368734-17368829)
chr5 (92-139)||(8177449-8177496)
chr5 (43-139)||(17369263-17369356)
chr5 (43-131)||(2568714-2568803)
chr5 (92-140)||(10391448-10391496)
[»] chr2 (13 HSPs)
chr2 (44-125)||(39622008-39622090)
chr2 (43-137)||(787388-787483)
chr2 (44-137)||(4350747-4350841)
chr2 (43-130)||(43529784-43529872)
chr2 (98-141)||(36114531-36114574)
chr2 (43-84)||(1801724-1801765)
chr2 (43-84)||(28677632-28677673)
chr2 (95-140)||(29936137-29936182)
chr2 (92-137)||(43259941-43259986)
chr2 (109-145)||(2790361-2790397)
chr2 (44-130)||(5902477-5902562)
chr2 (92-140)||(31096408-31096456)
chr2 (92-140)||(40759266-40759314)
[»] chr8 (3 HSPs)
chr8 (43-140)||(16162816-16162914)
chr8 (92-131)||(27465457-27465496)
chr8 (52-84)||(10120822-10120854)
[»] chr3 (8 HSPs)
chr3 (47-124)||(20194965-20195043)
chr3 (43-140)||(44014714-44014812)
chr3 (99-145)||(1820043-1820089)
chr3 (103-145)||(27896089-27896131)
chr3 (109-147)||(47132439-47132477)
chr3 (43-130)||(2304197-2304285)
chr3 (92-140)||(22667509-22667557)
chr3 (92-140)||(22724148-22724196)
[»] chr1 (6 HSPs)
chr1 (43-146)||(10199318-10199422)
chr1 (92-143)||(35017688-35017739)
chr1 (44-83)||(37811909-37811948)
chr1 (63-144)||(10280725-10280807)
chr1 (51-131)||(51929387-51929468)
chr1 (52-131)||(18327071-18327151)
[»] chr6 (2 HSPs)
chr6 (91-138)||(33068520-33068567)
chr6 (53-140)||(32171299-32171387)
[»] chr7 (1 HSPs)
chr7 (52-131)||(3836608-3836688)


Alignment Details
Target: chr4 (Bit Score: 277; Significance: 1e-155; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 307
Target Start/End: Original strand, 44938731 - 44939036
Alignment:
Q  1 tatctatcatggaaagcttatggaaataagctnnnnnnncatcttatgaatatgtcataacctgttttcataagttctctcaaaagggtcccaagtgctt 100  Q
    ||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44938731 tatctatcatggaaagcttatggaaataagctaaaaaa-catcttatgaatatgtcataacctgttttcataagttctctcaaaagggtcccaagtgctt 44938829  T
Q  101 atgccaaaagataagttcaaataagccaatcgaaacaggctcttaatagcatatcaaatgcttgtatttcttctgtattgtgatataactgtaatcaggg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44938830 atgccaaaagataagttcaaataagccaatcgaaacaggctcttaatagcatatcaaatgcttgtatttcttctgtattgtgatataactgtaatcaggg 44938929  T
Q  201 gactgattgtgtacagtttttattctgattttattttcttgtatctcatctcattagttaggacaaattctgcttgcctataaaatacaactatgcttcc 300  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44938930 gactgattgtgtacagtttttattttgattttattttcttgtatctcatctcattagttaggacaaattctgcttgcctataaaatacaactatgcttcc 44939029  T
Q  301 tcttttt 307  Q
    |||||||    
T  44939030 tcttttt 44939036  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 53 - 131
Target Start/End: Original strand, 29375969 - 29376048
Alignment:
Q  53 tgtcataacctgttttcataagttctctcaaa-agggtcccaagtgcttatgccaaaagataagttcaaataagccaatc 131  Q
    |||||||| |||||| |||||| ||||| ||| || ||| |||||||||||| ||| |||||||||||||||||||||||    
T  29375969 tgtcataagctgtttccataagctctctgaaatagcgtcacaagtgcttatgtcaatagataagttcaaataagccaatc 29376048  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 43 - 140
Target Start/End: Original strand, 2996629 - 2996727
Alignment:
Q  43 cttatgaatatgtcataacctgttttcataagttctctcaaa-agggtcccaagtgcttatgccaaaagataagttcaaataagccaatcgaaacaggc 140  Q
    |||||| | |||||||||  |||||||||||| ||||||||| ||  ||  ||||||||||| ||| | |||||||||||||||| |||| ||| ||||    
T  2996629 cttatggacatgtcataagttgttttcataagctctctcaaacagtctcaaaagtgcttatgtcaataaataagttcaaataagctaatctaaataggc 2996727  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 84
Target Start/End: Complemental strand, 37863968 - 37863927
Alignment:
Q  43 cttatgaatatgtcataacctgttttcataagttctctcaaa 84  Q
    ||||||||  |||||||| |||||||||||||||||||||||    
T  37863968 cttatgaacgtgtcataagctgttttcataagttctctcaaa 37863927  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 32
Target Start/End: Original strand, 25309555 - 25309583
Alignment:
Q  4 ctatcatggaaagcttatggaaataagct 32  Q
    |||||||||||||||||||||||||||||    
T  25309555 ctatcatggaaagcttatggaaataagct 25309583  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 41 - 136
Target Start/End: Complemental strand, 32831534 - 32831438
Alignment:
Q  41 atcttatgaatatgtcataacctgttttcataagttctctcaaaagg-gtcccaagtgcttatgccaaaagataagttcaaataagccaatcgaaac 136  Q
    ||||||||||||||| ||||  |||||||||  |||||| |||||||  ||  ||||||||||| ||  ||||||| |||||| |||||||| ||||    
T  32831534 atcttatgaatatgttataagttgttttcatctgttctcccaaaaggtatcaaaagtgcttatgtcagtagataagctcaaatgagccaatccaaac 32831438  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 92 - 140
Target Start/End: Original strand, 47146050 - 47146098
Alignment:
Q  92 caagtgcttatgccaaaagataagttcaaataagccaatcgaaacaggc 140  Q
    |||||||||||||||| | ||||||||||||||| ||||| ||| ||||    
T  47146050 caagtgcttatgccaatatataagttcaaataagtcaatccaaataggc 47146098  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 45 - 143
Target Start/End: Original strand, 17368734 - 17368829
Alignment:
Q  45 tatgaatatgtcataacctgttttcataagttctctcaaaagggtcccaagtgcttatgccaaaagataagttcaaataagccaatcgaaacaggctct 143  Q
    |||||| |||||||||  |||||||||||||||||||    | ||| |||||||||||||||  ||||||||| ||||||| ||||| |||||||||||    
T  17368734 tatgaacatgtcataagttgttttcataagttctctcg---gtgtcacaagtgcttatgccagtagataagtttaaataagtcaatccaaacaggctct 17368829  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 92 - 139
Target Start/End: Complemental strand, 8177496 - 8177449
Alignment:
Q  92 caagtgcttatgccaaaagataagttcaaataagccaatcgaaacagg 139  Q
    |||||||||||||| ||||||||||||||||||||||||| |||||||    
T  8177496 caagtgcttatgccgaaagataagttcaaataagccaatccaaacagg 8177449  T

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Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 43 - 139
Target Start/End: Original strand, 17369263 - 17369356
Alignment:
Q  43 cttatgaatatgtcataacctgttttcataagttctctcaaaagggtcccaagtgcttatgccaaaagataagttcaaataagccaatcgaaacagg 139  Q
    ||||| |||||||||| | ||||||||||||||||||||   || ||| |||||| ||||| ||  ||||||||||||||||| ||||| |||||||    
T  17369263 cttataaatatgtcattatctgttttcataagttctctc---agtgtcacaagtgattatgtcagtagataagttcaaataagtcaatccaaacagg 17369356  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 43 - 131
Target Start/End: Original strand, 2568714 - 2568803
Alignment:
Q  43 cttatgaatatgtcataacctgttttcataagttc-tctcaaaagggtcccaagtgcttatgccaaaagataagttcaaataagccaatc 131  Q
    |||||||||||||||||| |||||||||||||||| ||| || ||  || ||||||||||  |||  ||||||| ||||||||| |||||    
T  2568714 cttatgaatatgtcataagctgttttcataagttcttctaaacagtctctcaagtgcttacaccagtagataagctcaaataagacaatc 2568803  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 92 - 140
Target Start/End: Original strand, 10391448 - 10391496
Alignment:
Q  92 caagtgcttatgccaaaagataagttcaaataagccaatcgaaacaggc 140  Q
    |||||| ||||||||  ||||||| | ||||||||||||||||||||||    
T  10391448 caagtgattatgccagcagataagcttaaataagccaatcgaaacaggc 10391496  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 44 - 125
Target Start/End: Original strand, 39622008 - 39622090
Alignment:
Q  44 ttatgaatatgtcataacctgttttcataagttctctcaaa-agggtcccaagtgcttatgccaaaagataagttcaaataag 125  Q
    |||||||| ||||||||  |||||||||||||||||||||| || ||| ||||||||||| | |  |||||||||||||||||    
T  39622008 ttatgaatttgtcataagttgttttcataagttctctcaaacagtgtcgcaagtgcttatacaagtagataagttcaaataag 39622090  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 43 - 137
Target Start/End: Original strand, 787388 - 787483
Alignment:
Q  43 cttatgaatatgtcataacctgttttcataagttctctcaaa-agggtcccaagtgcttatgccaaaagataagttcaaataagccaatcgaaaca 137  Q
    |||||| | ||||||||| |||||||||||||||||| |||| || ||| |||||||||||||||  ||||| | || ||||| |||||| |||||    
T  787388 cttatggacatgtcataagctgttttcataagttctcacaaacagtgtcacaagtgcttatgccagtagatatgctcgaataatccaatccaaaca 787483  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 44 - 137
Target Start/End: Original strand, 4350747 - 4350841
Alignment:
Q  44 ttatgaatatgtcataacctgttttcataagttctctcaaa-agggtcccaagtgcttatgccaaaagataagttcaaataagccaatcgaaaca 137  Q
    ||||||| ||||||||| ||||||||||||||||||||||| |   ||  ||||||||||| ||  ||| ||| ||||||||||||||| |||||    
T  4350747 ttatgaacatgtcataagctgttttcataagttctctcaaacaatctcttaagtgcttatgtcagtagagaagctcaaataagccaatccaaaca 4350841  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 43 - 130
Target Start/End: Complemental strand, 43529872 - 43529784
Alignment:
Q  43 cttatgaatatgtcataacctgttttcataagttctctcaaa-agggtcccaagtgcttatgccaaaagataagttcaaataagccaat 130  Q
    |||||||| ||| ||||| |||||||||||| ||||| |||| || |||  |||||||||| |||| ||||||| ||||||||| ||||    
T  43529872 cttatgaacatggcataagctgttttcataaattctcccaaacagtgtcagaagtgcttataccaatagataagctcaaataagtcaat 43529784  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 98 - 141
Target Start/End: Original strand, 36114531 - 36114574
Alignment:
Q  98 cttatgccaaaagataagttcaaataagccaatcgaaacaggct 141  Q
    |||||| ||| || ||||||||||||||||||||||||||||||    
T  36114531 cttatgtcaataggtaagttcaaataagccaatcgaaacaggct 36114574  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 84
Target Start/End: Original strand, 1801724 - 1801765
Alignment:
Q  43 cttatgaatatgtcataacctgttttcataagttctctcaaa 84  Q
    |||||||| ||||||||| |||||||||||||||||| ||||    
T  1801724 cttatgaacatgtcataagctgttttcataagttctcccaaa 1801765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 84
Target Start/End: Complemental strand, 28677673 - 28677632
Alignment:
Q  43 cttatgaatatgtcataacctgttttcataagttctctcaaa 84  Q
    |||||||| ||||||||| |||||||||||||||||| ||||    
T  28677673 cttatgaaaatgtcataagctgttttcataagttctcccaaa 28677632  T

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Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 140
Target Start/End: Original strand, 29936137 - 29936182
Alignment:
Q  95 gtgcttatgccaaaagataagttcaaataagccaatcgaaacaggc 140  Q
    |||||||||||| ||||| || ||||||||||||||| ||||||||    
T  29936137 gtgcttatgccagaagatgagctcaaataagccaatccaaacaggc 29936182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 137
Target Start/End: Original strand, 43259941 - 43259986
Alignment:
Q  92 caagtgcttatgccaaaagataagttcaaataagccaatcgaaaca 137  Q
    ||||||||||||| |  ||||||||||||||||||||||| |||||    
T  43259941 caagtgcttatgctagtagataagttcaaataagccaatccaaaca 43259986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 109 - 145
Target Start/End: Original strand, 2790361 - 2790397
Alignment:
Q  109 agataagttcaaataagccaatcgaaacaggctctta 145  Q
    ||||||||||||||||||||||| |||||||| ||||    
T  2790361 agataagttcaaataagccaatccaaacaggccctta 2790397  T

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Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 130
Target Start/End: Complemental strand, 5902562 - 5902477
Alignment:
Q  44 ttatgaatatgtcataacctgttttcataagttctctcaaa-agggtcccaagtgcttatgccaaaagataagttcaaataagccaat 130  Q
    ||||||| ||||||||| |||||||||||||||||  |||| ||  || |||||| |||||||   ||||||||||||||||| ||||    
T  5902562 ttatgaacatgtcataagctgttttcataagttcttccaaacagtctcacaagtgtttatgcc--tagataagttcaaataagtcaat 5902477  T

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Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 92 - 140
Target Start/End: Original strand, 31096408 - 31096456
Alignment:
Q  92 caagtgcttatgccaaaagataagttcaaataagccaatcgaaacaggc 140  Q
    |||||||||||| ||  ||||||||||||||||||||||  ||||||||    
T  31096408 caagtgcttatgtcagtagataagttcaaataagccaatttaaacaggc 31096456  T

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Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 92 - 140
Target Start/End: Original strand, 40759266 - 40759314
Alignment:
Q  92 caagtgcttatgccaaaagataagttcaaataagccaatcgaaacaggc 140  Q
    |||||||||||| ||| ||||||| ||||||||| ||||| ||||||||    
T  40759266 caagtgcttatgtcaatagataagctcaaataaggcaatccaaacaggc 40759314  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 43 - 140
Target Start/End: Original strand, 16162816 - 16162914
Alignment:
Q  43 cttatgaatatgtcataacctgttttcataagttctctcaaa-agggtcccaagtgcttatgccaaaagataagttcaaataagccaatcgaaacaggc 140  Q
    |||||||| | ||||||| ||||||||||||||| ||||||| ||  || |||||| |||||| |  ||||||  ||||||||||||||| ||||||||    
T  16162816 cttatgaacaggtcataagctgttttcataagttttctcaaacagtctcacaagtgtttatgctagtagataaactcaaataagccaatccaaacaggc 16162914  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 92 - 131
Target Start/End: Original strand, 27465457 - 27465496
Alignment:
Q  92 caagtgcttatgccaaaagataagttcaaataagccaatc 131  Q
    |||||||||||||||| ||||||||||||||||| |||||    
T  27465457 caagtgcttatgccaatagataagttcaaataagtcaatc 27465496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 84
Target Start/End: Original strand, 10120822 - 10120854
Alignment:
Q  52 atgtcataacctgttttcataagttctctcaaa 84  Q
    ||||||||| |||||||||||||||||||||||    
T  10120822 atgtcataagctgttttcataagttctctcaaa 10120854  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 47 - 124
Target Start/End: Complemental strand, 20195043 - 20194965
Alignment:
Q  47 tgaatatgtcataacctgttttcataagttctctcaaa-agggtcccaagtgcttatgccaaaagataagttcaaataa 124  Q
    |||||||||||||| ||||||||||||| |||| |||| ||  || ||| ||||||||| | |||||||||||||||||    
T  20195043 tgaatatgtcataaactgttttcataagctctcacaaacagtctcacaactgcttatgcaagaagataagttcaaataa 20194965  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 43 - 140
Target Start/End: Complemental strand, 44014812 - 44014714
Alignment:
Q  43 cttatgaatatgtcataacctgttttcataagttctctcaaa-agggtcccaagtgcttatgccaaaagataagttcaaataagccaatcgaaacaggc 140  Q
    |||||||| | ||||||| ||||||||||||||| ||||||| ||  || |||||| |||||| |  ||||||  ||||||||||||||| ||||||||    
T  44014812 cttatgaacaggtcataagctgttttcataagttttctcaaacagtctcacaagtgtttatgctagtagataaactcaaataagccaatccaaacaggc 44014714  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 99 - 145
Target Start/End: Complemental strand, 1820089 - 1820043
Alignment:
Q  99 ttatgccaaaagataagttcaaataagccaatcgaaacaggctctta 145  Q
    |||||||| |||||||| ||||||||||||||| |||||||| ||||    
T  1820089 ttatgccataagataagctcaaataagccaatccaaacaggccctta 1820043  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 145
Target Start/End: Complemental strand, 27896131 - 27896089
Alignment:
Q  103 gccaaaagataagttcaaataagccaatcgaaacaggctctta 145  Q
    ||||| ||||||||||||||||||||||| |||||||| ||||    
T  27896131 gccaatagataagttcaaataagccaatccaaacaggccctta 27896089  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 109 - 147
Target Start/End: Original strand, 47132439 - 47132477
Alignment:
Q  109 agataagttcaaataagccaatcgaaacaggctcttaat 147  Q
    ||||||| ||||||||||||||| |||||||||||||||    
T  47132439 agataagctcaaataagccaatccaaacaggctcttaat 47132477  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 43 - 130
Target Start/End: Complemental strand, 2304285 - 2304197
Alignment:
Q  43 cttatgaatatgtcataacctgttttcataagttctctcaaa-agggtcccaagtgcttatgccaaaagataagttcaaataagccaat 130  Q
    |||||||| |||||||||  || |||||||| |||||||||| ||  || |||||| |||||| |  |||| |||||||||||||||||    
T  2304285 cttatgaacatgtcataagttgctttcataatttctctcaaatagtttcacaagtgtttatgctagtagatcagttcaaataagccaat 2304197  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 92 - 140
Target Start/End: Original strand, 22667509 - 22667557
Alignment:
Q  92 caagtgcttatgccaaaagataagttcaaataagccaatcgaaacaggc 140  Q
    |||||||||||| ||  ||||||| ||||||||||||||||||| ||||    
T  22667509 caagtgcttatgtcagtagataagctcaaataagccaatcgaaataggc 22667557  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 92 - 140
Target Start/End: Original strand, 22724148 - 22724196
Alignment:
Q  92 caagtgcttatgccaaaagataagttcaaataagccaatcgaaacaggc 140  Q
    |||||||||||| ||  ||||||| ||||||||||||||||||| ||||    
T  22724148 caagtgcttatgtcagtagataagctcaaataagccaatcgaaataggc 22724196  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 43 - 146
Target Start/End: Complemental strand, 10199422 - 10199318
Alignment:
Q  43 cttatgaatatgtcataacctgttttcataagttctctcaaa-agggtcccaagtgcttatgccaaaagataagttcaaataagccaatcgaaacaggct 141  Q
    |||||||| ||||||||| || ||||||| ||||||| |||| || ||| ||||||||||||  |  ||||||| ||||||||| ||||| || |||||     
T  10199422 cttatgaacatgtcataagctattttcatgagttctcccaaatagtgtcacaagtgcttatgttagtagataagctcaaataagtcaatccaaccaggcc 10199323  T
Q  142 cttaa 146  Q
    |||||    
T  10199322 cttaa 10199318  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 92 - 143
Target Start/End: Original strand, 35017688 - 35017739
Alignment:
Q  92 caagtgcttatgccaaaagataagttcaaataagccaatcgaaacaggctct 143  Q
    |||||| ||||||||| ||||||| ||||||||||||||| ||||| |||||    
T  35017688 caagtgtttatgccaatagataagctcaaataagccaatctaaacaagctct 35017739  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 44 - 83
Target Start/End: Original strand, 37811909 - 37811948
Alignment:
Q  44 ttatgaatatgtcataacctgttttcataagttctctcaa 83  Q
    ||||||| ||||||||| ||||||||||||||||||||||    
T  37811909 ttatgaacatgtcataagctgttttcataagttctctcaa 37811948  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 63 - 144
Target Start/End: Original strand, 10280725 - 10280807
Alignment:
Q  63 tgttttcataagttctc-tcaaaagggtcccaagtgcttatgccaaaagataagttcaaataagccaatcgaaacaggctctt 144  Q
    ||||||||||||||||| | || || ||| ||| |||||||||||| ||||| ||||||||||| ||||| ||| || |||||    
T  10280725 tgttttcataagttctcctgaacagtgtcacaattgcttatgccaatagataggttcaaataagtcaatctaaatagactctt 10280807  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 131
Target Start/End: Complemental strand, 51929468 - 51929387
Alignment:
Q  51 tatgtcataacctgttttcataagttctctcaaa-agggtcccaagtgcttatgccaaaagataagttcaaataagccaatc 131  Q
    |||||||||| ||||||||||||||||||| ||| || ||| || ||||||||| ||  ||||||| ||||| ||| |||||    
T  51929468 tatgtcataagctgttttcataagttctcttaaacagtgtcacaggtgcttatgtcagtagataagctcaaaaaagtcaatc 51929387  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 131
Target Start/End: Complemental strand, 18327151 - 18327071
Alignment:
Q  52 atgtcataacctgttttcataagttctctcaaa-agggtcccaagtgcttatgccaaaagataagttcaaataagccaatc 131  Q
    |||||||||  ||||||||||||||||  |||| || |||  ||||||||||| ||  ||||||| |||||||||||||||    
T  18327151 atgtcataagttgttttcataagttcttccaaatagtgtcaaaagtgcttatgacagtagataagctcaaataagccaatc 18327071  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 91 - 138
Target Start/End: Complemental strand, 33068567 - 33068520
Alignment:
Q  91 ccaagtgcttatgccaaaagataagttcaaataagccaatcgaaacag 138  Q
    ||||||||||||| ||  ||||||||||||||||||||||| ||||||    
T  33068567 ccaagtgcttatgtcagtagataagttcaaataagccaatccaaacag 33068520  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 140
Target Start/End: Complemental strand, 32171387 - 32171299
Alignment:
Q  53 tgtcataacctgttttcataagttctctcaaa-agggtcccaagtgcttatgccaaaagataagttcaaataagccaatcgaaacaggc 140  Q
    |||||||| ||||||||||||| ||||||||| ||  || |||||||||||| ||| |  |||| | ||||||| ||||| ||||||||    
T  32171387 tgtcataagctgttttcataagctctctcaaacagtctcgcaagtgcttatgtcaatacttaagctgaaataagacaatccaaacaggc 32171299  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 131
Target Start/End: Complemental strand, 3836688 - 3836608
Alignment:
Q  52 atgtcataacctgttttcataagttctctcaaa-agggtcccaagtgcttatgccaaaagataagttcaaataagccaatc 131  Q
    ||||||||| || ||||||||||||||| |||| ||  || |||||||||| ||||  ||||||| ||||||||| |||||    
T  3836688 atgtcataagctattttcataagttctcccaaacagtttcacaagtgcttaagccagtagataagctcaaataaggcaatc 3836608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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