View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2980_high_1 (Length: 599)

Name: NF2980_high_1
Description: NF2980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2980_high_1
NF2980_high_1
[»] chr1 (2 HSPs)
chr1 (269-589)||(13397532-13397854)
chr1 (18-238)||(13397313-13397532)
[»] chr5 (3 HSPs)
chr5 (18-232)||(19943884-19944102)
chr5 (234-308)||(19943782-19943856)
chr5 (360-463)||(16117329-16117433)
[»] chr6 (4 HSPs)
chr6 (18-221)||(8272951-8273158)
chr6 (18-232)||(796669-796887)
chr6 (234-308)||(796915-796989)
chr6 (234-308)||(8272838-8272912)
[»] chr7 (2 HSPs)
chr7 (18-232)||(6691934-6692152)
chr7 (234-332)||(6691804-6691906)
[»] chr4 (1 HSPs)
chr4 (386-460)||(15784200-15784274)


Alignment Details
Target: chr1 (Bit Score: 260; Significance: 1e-144; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 269 - 589
Target Start/End: Original strand, 13397532 - 13397854
Alignment:
Q  269 gcttgttcccacgtatgatcggagatcaaagactttatttt--ttcatggaaagcttccacttacttgcacatgtggtcatatgcttcgttatatgtagt 366  Q
    |||||||||||||||||||| ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  13397532 gcttgttcccacgtatgatcagagatcaaagactttattttttttcatggaaagcttccacttacttgcacatgtggtcatatgtttcgttatatgtagt 13397631  T
Q  367 ttgctccttggttcaattaaatagttttgatgatgttcatttcttgaattaattagattatgtttttgtttagttgtagcttagttaccattgtaagaca 466  Q
    |||||||||||||||||||||||||| |||||||||||| || ||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||    
T  13397632 ttgctccttggttcaattaaatagttctgatgatgttcacttgttgaattaattagattatgtttttgtttagttgtaacttggttaccattgtaagaca 13397731  T
Q  467 ttcgtagatcgttgtagaaacaagtttagttgtcatctcttttcagaatctcatatctcaagttttgattcgattcaaaattggtatacattctttgaat 566  Q
    |||||||||| |||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  13397732 ttcgtagatcattgtagcaacaagtttggttgtcatctcttttcagaatctcatatctcaagttttgattctattcaaaattggtatacattctttgaat 13397831  T
Q  567 cgaagcacttttctatccctatg 589  Q
    ||||||| |||||||||| ||||    
T  13397832 cgaagcatttttctatccttatg 13397854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 18 - 238
Target Start/End: Original strand, 13397313 - 13397532
Alignment:
Q  18 gttgttgcatgtatatatcctcaattaagtctccacgaagaaatgcagtcttcacatccaactattcaagataaagattttcactggcaacaatacttaa 117  Q
    |||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  13397313 gttggtgcatgtatatatcctcaactaagtctccacgaagaaatgcagtcttcacatccaactattcaagataaagattttcaatggcaacaatacttaa 13397412  T
Q  118 tagaaacatgatagtattgagcttaactattggagcaaaaatttcatagtaaaattcttcgttttgttagaatccttgaccactattcgggatttgtatc 217  Q
    |||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| ||||| |||||||||||||||| ||||||||||||||||    
T  13397413 tagaaacatgatagtattgagcttaactattggaac-aaaatttcatagtaaaattcttccttttgctagaatccttgaccaccattcgggatttgtatc 13397511  T
Q  218 tcttagagacatcatatgttg 238  Q
    |||||||||||||||||||||    
T  13397512 tcttagagacatcatatgttg 13397532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 89; Significance: 1e-42; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 18 - 232
Target Start/End: Complemental strand, 19944102 - 19943884
Alignment:
Q  18 gttgttgcatgtatatatcctcaattaagtctccacgaagaaatgcagtcttcacatccaactattcaagataaagattttcactggcaacaatacttaa 117  Q
    |||| ||||||||||| ||||| | |||||||||| |||||||||||||||||||||| ||||  |||||||| ||||||||||||||||||||||||||    
T  19944102 gttggtgcatgtatatttcctccactaagtctccatgaagaaatgcagtcttcacatctaactgctcaagatagagattttcactggcaacaatacttaa 19944003  T
Q  118 tagaaacatgatagtattgagcttaactattggagcaaaaatttca---tagtaaaattcttcgttttgttagaatcc-ttgaccactattcgggatttg 213  Q
     | | || |||||||||||||||| || | |||||||||||| |||   |||| || | |||| ||||| | |||||| |||||||||| ||||| ||||    
T  19944002 gacagacctgatagtattgagcttcaccactggagcaaaaatctcagtgtagtcaattccttccttttgctggaatcctttgaccactagtcgggctttg 19943903  T
Q  214 tatctcttagagacatcat 232  Q
    |||||||| ||| ||||||    
T  19943902 tatctctttgagccatcat 19943884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 234 - 308
Target Start/End: Complemental strand, 19943856 - 19943782
Alignment:
Q  234 tgttgtgaagttccttctttcctatgagtaacttagcttgttcccacgtatgatcggagatcaaagactttattt 308  Q
    ||||||||||| |||||||||||||| ||||||||||| | ||||| || |||| ||||||||||||||| ||||    
T  19943856 tgttgtgaagtgccttctttcctatgggtaacttagctagctcccatgtttgattggagatcaaagacttcattt 19943782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 360 - 463
Target Start/End: Original strand, 16117329 - 16117433
Alignment:
Q  360 atgtagtttgctccttggttcaattaaata-gttttgatgatgttcatttcttgaattaattagattatgtttttgtttagttgtagcttagttaccatt 458  Q
    |||||||||| || |||||||||||| ||| |||||| |||| || ||| ||||| || || |||| |||||||||||| | | | |||||||||| |||    
T  16117329 atgtagtttgttcattggttcaattagataagttttgttgatatttattccttgacttgataagataatgtttttgtttggctatcgcttagttactatt 16117428  T
Q  459 gtaag 463  Q
    |||||    
T  16117429 gtaag 16117433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 86; Significance: 8e-41; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 18 - 221
Target Start/End: Complemental strand, 8273158 - 8272951
Alignment:
Q  18 gttgttgcatgtatatatcctcaattaagtctccacgaagaaatgcagtcttcacatccaactattcaagataaagattttcactggcaacaatacttaa 117  Q
    |||| ||||||||||| ||||| | |||||||||| |||||||||||||||||||||| ||||  |||||||| ||||||||||||||||||||||||||    
T  8273158 gttggtgcatgtatatttcctccactaagtctccatgaagaaatgcagtcttcacatctaactgctcaagatagagattttcactggcaacaatacttaa 8273059  T
Q  118 tagaaacatgatagtattgagcttaactattggagcaaaaatttca---tagtaaaattcttcgttttgttagaatcc-ttgaccactattcgggatttg 213  Q
     | | || |||||||||||||||| || | |||||||||||| |||   |||| || | |||| ||||| | |||||| |||||||||| ||||| ||||    
T  8273058 gacagacctgatagtattgagcttcaccactggagcaaaaatctcagtgtagtcaattccttccttttgctggaatcctttgaccactagtcgggctttg 8272959  T
Q  214 tatctctt 221  Q
    ||||||||    
T  8272958 tatctctt 8272951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 18 - 232
Target Start/End: Original strand, 796669 - 796887
Alignment:
Q  18 gttgttgcatgtatatatcctcaattaagtctccacgaagaaatgcagtcttcacatccaactattcaagataaagattttcactggcaacaatacttaa 117  Q
    |||| ||||||||||| ||||| | |||||||||| |||||||||||||||||||||| ||||  |||||||| ||||||||||||||||||||||||||    
T  796669 gttggtgcatgtatatttcctccactaagtctccatgaagaaatgcagtcttcacatctaactgctcaagatagagattttcactggcaacaatacttaa 796768  T
Q  118 tagaaacatgatagtattgagcttaactattggagcaaaaatttca---tagtaaaattcttcgttttgttagaatcc-ttgaccactattcgggatttg 213  Q
     | | || |||||||||||||||| || | |||||||||||| |||   |||| || | |||| |||||   |||||| |||||||||| ||||| ||||    
T  796769 gacagacctgatagtattgagcttcaccactggagcaaaaatctcagtgtagtcaattccttccttttgccggaatcctttgaccactagtcgggctttg 796868  T
Q  214 tatctcttagagacatcat 232  Q
    |||||||| ||| ||||||    
T  796869 tatctctttgagccatcat 796887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 234 - 308
Target Start/End: Original strand, 796915 - 796989
Alignment:
Q  234 tgttgtgaagttccttctttcctatgagtaacttagcttgttcccacgtatgatcggagatcaaagactttattt 308  Q
    ||||||||||| |||||||||||||| ||||||||||| | ||||| || |||| ||||||||||||||| ||||    
T  796915 tgttgtgaagtgccttctttcctatgggtaacttagctagctcccatgtttgattggagatcaaagacttcattt 796989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 234 - 308
Target Start/End: Complemental strand, 8272912 - 8272838
Alignment:
Q  234 tgttgtgaagttccttctttcctatgagtaacttagcttgttcccacgtatgatcggagatcaaagactttattt 308  Q
    ||||||||||| |||||||||||||| ||||||||||| | ||||| || |||| ||||||||||||||| ||||    
T  8272912 tgttgtgaagtgccttctttcctatgggtaacttagctagctcccatgtttgattggagatcaaagacttcattt 8272838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 81; Significance: 8e-38; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 18 - 232
Target Start/End: Complemental strand, 6692152 - 6691934
Alignment:
Q  18 gttgttgcatgtatatatcctcaattaagtctccacgaagaaatgcagtcttcacatccaactattcaagataaagattttcactggcaacaatacttaa 117  Q
    |||| ||||||||||| ||||| | |||||||||| |||||||||||||||||||||| ||||  |||||||| ||||||||||||||||||||||||||    
T  6692152 gttggtgcatgtatatttcctccactaagtctccatgaagaaatgcagtcttcacatctaactgctcaagatagagattttcactggcaacaatacttaa 6692053  T
Q  118 tagaaacatgatagtattgagcttaactattggagcaaaaatttca---tagtaaaattcttcgttttgttagaatcc-ttgaccactattcgggatttg 213  Q
     | | || |||||||||||||||| || | |||||||||||| |||    ||| || | |||| ||||| | ||| || |||||||||| ||||| ||||    
T  6692052 gacagacctgatagtattgagcttcaccactggagcaaaaatctcagtgcagtcaattccttccttttgctggaaccctttgaccactagtcgggctttg 6691953  T
Q  214 tatctcttagagacatcat 232  Q
    |||||||| ||| ||||||    
T  6691952 tatctctttgagccatcat 6691934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 234 - 332
Target Start/End: Complemental strand, 6691906 - 6691804
Alignment:
Q  234 tgttgtgaagttccttctttcctatgagtaacttagcttgttcccacgtatgatcggagatcaaagactttattt----tttcatggaaagcttccactt 329  Q
    ||||||||||| |||||||||||||| ||||||||||| | ||||| || |||| ||||||||||||||| ||||    |||||||| ||||| ||||||    
T  6691906 tgttgtgaagtgccttctttcctatgggtaacttagctagctcccatgtctgattggagatcaaagacttcatttcctctttcatggcaagctcccactt 6691807  T
Q  330 act 332  Q
    |||    
T  6691806 act 6691804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 386 - 460
Target Start/End: Complemental strand, 15784274 - 15784200
Alignment:
Q  386 aatagttttgatgatgttcatttcttgaattaattagattatgtttttgtttagttgtagcttagttaccattgt 460  Q
    ||||||||||||||||||   | ||||| ||  |||||| ||||||||||||| ||| | |||||||||||||||    
T  15784274 aatagttttgatgatgttttctccttgatttgtttagataatgtttttgtttaattgcaacttagttaccattgt 15784200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University