View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2980_high_14 (Length: 238)
Name: NF2980_high_14
Description: NF2980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2980_high_14 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 21 - 238
Target Start/End: Original strand, 10103691 - 10103908
Alignment:
| Q |
21 |
gcccaaatgtaaactggaataaaggtgatgctctaatgtattttcttgacactcttggatataacacctttgatgatgttctaccaatatacattggaga |
120 |
Q |
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| T |
10103691 |
gcccaaatgtgaactggaataaaggcgatgctctaatgtattttcttgacactcttggatataacacctttgatgatgttctaccaatatacattggaga |
10103790 |
T |
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| Q |
121 |
tgatagaacggatgaagatgcttttaaggtatgtttagttaaaatagaaaactcattttgaagagatgttgatttcaaagaataatatttccttacgaca |
220 |
Q |
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| T |
10103791 |
tgatagaacagatgaagatgcttttaaggtatgtttggttaaaatagaaaactcattttgaagagatgttgatttcaaagaataatatttccttacgata |
10103890 |
T |
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| Q |
221 |
tttatttattaactactc |
238 |
Q |
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| T |
10103891 |
tttatttattaactactc |
10103908 |
T |
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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 152
Target Start/End: Complemental strand, 41340991 - 41340947
Alignment:
| Q |
108 |
tatacattggagatgatagaacggatgaagatgcttttaaggtat |
152 |
Q |
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| T |
41340991 |
tatatattggtgatgataaaactgatgaagatgcttttaaggtat |
41340947 |
T |
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