View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2980_high_2 (Length: 507)
Name: NF2980_high_2
Description: NF2980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2980_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 201; Significance: 1e-109; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 258 - 497
Target Start/End: Original strand, 8452596 - 8452838
Alignment:
| Q |
258 |
ttttgtaaaaatatgtgtggaagaattaaattttctctgcccttatgaatgagtgcaaattgagaagcatgcgtcaaaatggctcttgaatctagataga |
357 |
Q |
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| T |
8452596 |
ttttgtaaaaatatgtgtggaagaattaaattttctctgcccttatgaatgagtgcaaattgagaagcatgcgtcaaaatggctc--gaatctagataga |
8452693 |
T |
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| Q |
358 |
attttatcttattttaagtagttgcaaattaagcaggtgcattagtcttatgcca---tagtagatagatatataaaatgagtccctatagtctctgcag |
454 |
Q |
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| T |
8452694 |
attttatcttattttaagttgttgcaaattaagcaggtgcattagtcttatgccatactagtagatagatatataaaatgagtccctatagtctctgcag |
8452793 |
T |
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| Q |
455 |
gtgcattttatac--atatcaaaattacaggtgtgtattcttcat |
497 |
Q |
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| T |
8452794 |
gtgcattttatacatatatcaaaattacaggtgtgtattattcat |
8452838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 19 - 187
Target Start/End: Original strand, 8452357 - 8452525
Alignment:
| Q |
19 |
agctcggacatggcattgatgttactgcagcagggtaatagagatgaagagaacaagttaagtccatttttgaatgcaagttcagattgcagtgatattg |
118 |
Q |
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| T |
8452357 |
agctcggacatggcattgatgttactgcagcagggtaatagagatgaagagaacaagttaagtccatttttgaatgcaagttcagattgcagtgatattg |
8452456 |
T |
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| Q |
119 |
ggatatgcgtatttgaaaaatgaagcaagaagaaattaataaccattttatttgtactagtactagtag |
187 |
Q |
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| T |
8452457 |
ggatatgcgtatttgaaaaatgaagcaagaagaaattaataaccattttatttgtactagtattagtag |
8452525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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