View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2980_low_10 (Length: 344)
Name: NF2980_low_10
Description: NF2980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2980_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 171; Significance: 9e-92; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 171; E-Value: 9e-92
Query Start/End: Original strand, 13 - 215
Target Start/End: Complemental strand, 41696588 - 41696386
Alignment:
| Q |
13 |
atgggtcacatgaattttattcaatagaaaagattgaattaaaaaataaatgttagatactagcatttttcatttagttttgagaagtgagcattatagt |
112 |
Q |
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| T |
41696588 |
atgggtcacatgaattttattcaatagaagagattgaattaaaaaataaatgttagatactagcatttttcatttagttttgagaagtgagcattaaagt |
41696489 |
T |
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| Q |
113 |
aaataacaaagggtattgctataaaacatccatgaaggtgtgatttaacacaaaacatctacatgataaagacaaaaatcatttctctttaatatgtatt |
212 |
Q |
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| T |
41696488 |
aaataacaaagcatattgctataaaacatccatgaatgtgtgatttagcacaaaacacctatatgataaagacaaaaatcatttctctttaatatgtatt |
41696389 |
T |
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| Q |
213 |
tat |
215 |
Q |
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||| |
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| T |
41696388 |
tat |
41696386 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 211 - 344
Target Start/End: Complemental strand, 41696352 - 41696219
Alignment:
| Q |
211 |
tttatcatgtaggtgttgagtgctaaattacaccttcatgagtgttttatagcaatacccaataacaaaatagttatagatgcctcgtctgactaagtta |
310 |
Q |
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| T |
41696352 |
tttatcacgtaggtgttgagtgctaaatcacaccttcatgaatgttttatagcaatacccaataacaaaatagctatagatgtctcgtttgactaagtta |
41696253 |
T |
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| Q |
311 |
gttgaaccttatcatgtttgatgtggattcaaat |
344 |
Q |
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| T |
41696252 |
gtcgagacttatcatgtttgatgtagattcaaat |
41696219 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 123 - 190
Target Start/End: Original strand, 41696293 - 41696360
Alignment:
| Q |
123 |
gggtattgctataaaacatccatgaaggtgtgatttaacacaaaacatctacatgataaagacaaaaa |
190 |
Q |
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| T |
41696293 |
gggtattgctataaaacattcatgaaggtgtgatttagcactcaacacctacgtgataaagacaaaaa |
41696360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 211 - 267
Target Start/End: Original strand, 41696419 - 41696475
Alignment:
| Q |
211 |
tttatcatgtaggtgttgagtgctaaattacaccttcatgagtgttttatagcaata |
267 |
Q |
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| T |
41696419 |
tttatcatataggtgttttgtgctaaatcacacattcatggatgttttatagcaata |
41696475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 148 - 213
Target Start/End: Complemental strand, 38875290 - 38875223
Alignment:
| Q |
148 |
aggtgtgatttaacacaaaacatctacatgataaagacaaaaa--tcatttctctttaatatgtattt |
213 |
Q |
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| T |
38875290 |
aggtgtgatttagcacacatcacctacatgataaagacaaaaaagtcatttctctttaatatgtattt |
38875223 |
T |
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