View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2980_low_11 (Length: 294)
Name: NF2980_low_11
Description: NF2980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2980_low_11 |
 | |
|
| [»] scaffold0003 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-115; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 11680240 - 11680462
Alignment:
| Q |
1 |
tgcgatgcaatggatcgaactatgaaaacctttcctccgcagatggcgaaacttgccaacttagcagctcgcaaagctggaaccacttacgctatcaaca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11680240 |
tgcgatgcaatggatcgaactatgaaaacctttcctccgcagatggcgaaacttgccaactcagcagctcgcaaagctggaaccacttacgctatcaaca |
11680339 |
T |
|
| Q |
101 |
aattgtgctatgcaatggataaaactatgctgatataataggtgttggaatatttatttatattctattccaataataatggaattcatgatacaccaat |
200 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
11680340 |
aattgtgctatgcaatgcataaaactatgctgatataataggtgttggaatatttatttatattctattccaataataatggaattcatgaaacaccaat |
11680439 |
T |
|
| Q |
201 |
ggatcaaactattatattggcgc |
223 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
11680440 |
ggatcaaactattatattggcgc |
11680462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 21 - 129
Target Start/End: Original strand, 11680155 - 11680263
Alignment:
| Q |
21 |
tatgaaaacctttcctccgcagatggcgaaacttgccaacttagcagctcgcaaagctggaaccacttacgctatcaacaaattgtgctatgcaatggat |
120 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||| | || |||||||||||||||| ||||||||| | |||| ||||||||||| ||||||||||| |
|
|
| T |
11680155 |
tatgaaaacctttcctccccagatggcgaaacttgcaagctcagcagctcgcaaagctcgaaccacttttgatatccacaaattgtgcgatgcaatggat |
11680254 |
T |
|
| Q |
121 |
aaaactatg |
129 |
Q |
| |
|
||||||| |
|
|
| T |
11680255 |
cgaactatg |
11680263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 94; Significance: 6e-46; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 21 - 217
Target Start/End: Original strand, 416563 - 416760
Alignment:
| Q |
21 |
tatgaaaacctttcctccgcagatggcgaaacttgccaacttagcagctcgcaaagctggaaccacttacgctatcaacaaattgtgctatgcaatggat |
120 |
Q |
| |
|
|||||||| ||||||||| | | ||||||||||| ||| || || |||| |||||||| ||||||| |||||| |||||||||||| ||||||||||| |
|
|
| T |
416563 |
tatgaaaatctttcctccccggttggcgaaactttccagctcagtagcttgcaaagctcgaaccacggacgctaccaacaaattgtgtgatgcaatggat |
416662 |
T |
|
| Q |
121 |
aaaactatgctgatataataggtgttggaatatttatttatattctattc-caataataatggaattcatgatacaccaatggatcaaactattatat |
217 |
Q |
| |
|
||||||| | || |||||| | |||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
416663 |
cgaactatgtttatgtaatagttattggaatatttatttatattctattcttaataataatggaattcatgatacaccaacggatcaaactattatat |
416760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University