View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2980_low_13 (Length: 260)
Name: NF2980_low_13
Description: NF2980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2980_low_13 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 11680179 - 11679937
Alignment:
| Q |
1 |
catctggggaggaaaggttttcataactgcggccataatatctttggcagacaattttgatttccgacgtcgtaaactaaacttgacagatttctgaaca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |||||||||||||||||||||||||||||||| |
|
|
| T |
11680179 |
catctggggaggaaaggttttcataactgcggccataatatctttggcagacaattttgacttccaaggtcgtaaactaaacttgacagatttctgaaca |
11680080 |
T |
|
| Q |
101 |
agcgtcaccatcaagttggttatgatactattcatgcttttcaacgctccgcaagaaaatatgaatgccagggtgcacctgcttcagaacctggtagatg |
200 |
Q |
| |
|
||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
11680079 |
agcttcaccatcatgttggttatgatactattcatgcttttcaacgctccgcaagaaaatatgaatgccatggtgcacctgcttcagaacctggtagatg |
11679980 |
T |
|
| Q |
201 |
tacgcattgaacttgaacctcttcgagcctgcaggattcttat |
243 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
11679979 |
tactcattgaacttgaacctcttcgagcctgcagggttcttat |
11679937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University