View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2980_low_14 (Length: 256)
Name: NF2980_low_14
Description: NF2980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2980_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 113; Significance: 3e-57; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 18 - 142
Target Start/End: Original strand, 30909941 - 30910065
Alignment:
| Q |
18 |
aaatgcatgcaaagtaaagataaaggcagaaaggtagataataaaattgtgtaaatagattaagtttggttgattgtatgtcttctgaaattgtacaaga |
117 |
Q |
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| T |
30909941 |
aaatgcatgcaaaataaagataaaggcagaaaggtagagaataaaattgtgtaaatagattaagtttggttgattgtatgtcttatgaaattgtacaaga |
30910040 |
T |
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| Q |
118 |
tgggtatttataagaaaatttattt |
142 |
Q |
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| T |
30910041 |
tgggtatttataagaaaatttattt |
30910065 |
T |
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Target: chr8; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 145 - 243
Target Start/End: Original strand, 30910200 - 30910299
Alignment:
| Q |
145 |
atcatttgacaaagtctaaaa-gtgcatcctcccttgaaacatgtgtttgtagctatcgctccttttaataaatggcactataaacatagaacacaggtt |
243 |
Q |
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|||| ||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
30910200 |
atcagttgacaaagtctaaagtgtgcatcctcccttgaaacatgtgtttgtagttatcgctccttttaataaatggcactataaacatagaacacgggtt |
30910299 |
T |
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