View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2980_low_2 (Length: 547)

Name: NF2980_low_2
Description: NF2980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2980_low_2
NF2980_low_2
[»] chr5 (23 HSPs)
chr5 (9-224)||(11048013-11048244)
chr5 (256-531)||(10605296-10605571)
chr5 (240-531)||(10746406-10746688)
chr5 (240-531)||(10581539-10581830)
chr5 (240-531)||(10565547-10565838)
chr5 (256-531)||(10612254-10612529)
chr5 (240-531)||(10739800-10740091)
chr5 (256-531)||(10762231-10762506)
chr5 (242-531)||(10716365-10716642)
chr5 (247-531)||(7193550-7193834)
chr5 (238-531)||(10659458-10659751)
chr5 (258-496)||(9827352-9827590)
chr5 (258-496)||(9835721-9835959)
chr5 (282-496)||(10651619-10651833)
chr5 (445-531)||(11048241-11048327)
chr5 (323-419)||(10760796-10760892)
chr5 (283-393)||(10587895-10588005)
chr5 (242-346)||(19605243-19605347)
chr5 (241-344)||(10559629-10559732)
chr5 (270-356)||(10551520-10551606)
chr5 (416-523)||(10588010-10588117)
chr5 (120-183)||(10565949-10566012)
chr5 (243-300)||(9849623-9849680)
[»] chr6 (5 HSPs)
chr6 (256-531)||(12958601-12958876)
chr6 (256-531)||(12907713-12907988)
chr6 (256-531)||(12900093-12900371)
chr6 (256-531)||(12932802-12933077)
chr6 (256-531)||(12949156-12949417)
[»] chr2 (1 HSPs)
chr2 (256-531)||(17922808-17923083)
[»] scaffold0692 (1 HSPs)
scaffold0692 (426-531)||(7816-7921)
[»] chr3 (1 HSPs)
chr3 (256-356)||(31466548-31466648)


Alignment Details
Target: chr5 (Bit Score: 159; Significance: 2e-84; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 9 - 224
Target Start/End: Original strand, 11048013 - 11048244
Alignment:
Q  9 acatcatcacacataatttaatgttgcaaaccaaattcattgaacacactcatacacgcttccagctagacacttcttctcccacaaatgaccttataaa 108  Q
    |||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11048013 acataatcacacataatttaatcttgcaaaccaaattcattgaacacactcatacacgcttccagctagacacttcttctcccacaaatgaccttataaa 11048112  T
Q  109 tttagt----------------gtgaacacctgaaattcaaatcaagaggaagctcgttattgcctttgtattttgtaggttaggaattttgatatgcaa 192  Q
    ||||||                ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||    
T  11048113 tttagttcaattacttatgagtgtgaacacctgaaattcaaatcaagaggaagcttgttattgcctttgtattttgtaggttagaaattttgatatgcaa 11048212  T
Q  193 tcaattaatgaggagaaaaagtgtcaagtatc 224  Q
    |||||||||||||||||||||||| |||||||    
T  11048213 tcaattaatgaggagaaaaagtgttaagtatc 11048244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 256 - 531
Target Start/End: Complemental strand, 10605571 - 10605296
Alignment:
Q  256 taagctctctagtgacatccacaatattcattctttcttttggtgattccattgtacaaataagtccaatcctaaaaagtgaaactaagcactcctctac 355  Q
    |||||||| |||| ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| |||||||||||||||||| | ||||||||    
T  10605571 taagctctttagtaacatccataatattcattctttctttcggtgattccattgaacaaataagtccaattctaaaaagtgaaactaaggattcctctac 10605472  T
Q  356 acttggattaagattctcacaattttcatcttctattgctacttctacatctcttgatataagacgtcggtccaaaatcgttttaagattatcaggaaat 455  Q
     |||||| ||||||||  |   ||| ||| |||||||||||||||||||||||||| || |||  || |||||||||||  ||||| |||||||||||||    
T  10605471 ccttggaataagattcgtatggtttccattttctattgctacttctacatctcttgttacaaggtgtgggtccaaaatctctttaatattatcaggaaat 10605372  T
Q  456 gaaattgcaacaaagttatgcagattttgaccatcttcaaaaacttcattagcgggtcttctaccggtaagaattt 531  Q
    ||| ||||||||||||||||||||||||||||||||| ||||||||||| || |||||| ||||| ||||| ||||    
T  10605371 gaagttgcaacaaagttatgcagattttgaccatcttgaaaaacttcatcagtgggtctcctaccagtaagtattt 10605296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 240 - 531
Target Start/End: Original strand, 10746406 - 10746688
Alignment:
Q  240 gcctttctgattatgctaagctctctagtgacatccacaatattcattctttcttttggtgattccattgtacaaataagtccaatcctaaaaagtgaaa 339  Q
    ||||||||||||||| | ||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  10746406 gcctttctgattatgttgagctctctagtgacatccacagtattcattctttcttttggtgattcaattgtacaaataagtccaatcctaaaaagtgaaa 10746505  T
Q  340 ctaagcactcctctacacttggattaagattctcacaattttcatcttctattgctacttctacatctcttgatataagacgtcggtccaaaatcgtttt 439  Q
    |||| ||||| | |||| ||||| |||||||||||   ||| |||||||||         || |||||||||||| |||| |  ||||||| ||  || |    
T  10746506 ctaaacactcttttacagttggaataagattctcattgtttccatcttcta---------ctgcatctcttgatagaagatgcgggtccaagatatttat 10746596  T
Q  440 aagattatcaggaaatgaaattgcaacaaagttatgcagattttgaccatcttcaaaaacttcattagcgggtcttctaccggtaagaattt 531  Q
    ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| ||||| ||||    
T  10746597 aagattatcaggaaacgatattgcaacaaagttatgcagattttgaccatcttcaaaaacttcatcagtgggtcttctaccagtaagcattt 10746688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 240 - 531
Target Start/End: Complemental strand, 10581830 - 10581539
Alignment:
Q  240 gcctttctgattatgctaagctctctagtgacatccacaatattcattctttcttttggtgattccattgtacaaataagtccaatcctaaaaagtgaaa 339  Q
    |||||||||||||| ||||||||| ||   |||||| ||||||||| ||||||||||||||| ||||||| ||| |||||||||||||||||||||||||    
T  10581830 gcctttctgattatactaagctctatacatacatcctcaatattcagtctttcttttggtgactccattgaacacataagtccaatcctaaaaagtgaaa 10581731  T
Q  340 ctaagcactcctctacacttggattaagattctcacaattttcatcttctattgctacttctacatctcttgatataagacgtcggtccaaaatcgtttt 439  Q
    |||||||||||| | ||  |||| |||||||||||  |||| ||||||| ||| |||||||| | || ||||||| |||| || ||||||||||  | ||    
T  10581730 ctaagcactcctttgcagctggaataagattctcaagatttccatcttccatttctacttctgcgtcccttgataaaagatgtgggtccaaaattttctt 10581631  T
Q  440 aagattatcaggaaatgaaattgcaacaaagttatgcagattttgaccatcttcaaaaacttcattagcgggtcttctaccggtaagaattt 531  Q
    ||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| | | || || |||||||||||||||||| ||||    
T  10581630 aagattagcaggaaatgatattgcaacaaagttatgcagattttgaccatcttcaaaagcgtgatcagtgggtcttctaccggtaagcattt 10581539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 240 - 531
Target Start/End: Complemental strand, 10565838 - 10565547
Alignment:
Q  240 gcctttctgattatgctaagctctctagtgacatccacaatattcattctttcttttggtgattccattgtacaaataagtccaatcctaaaaagtgaaa 339  Q
    |||||||||||||| ||||||||||||   ||| || |||| || ||||||||||||||||| ||||||| ||| |||||||||||||||||||||||||    
T  10565838 gcctttctgattatactaagctctctacatacaacctcaatgttgattctttcttttggtgactccattgaacacataagtccaatcctaaaaagtgaaa 10565739  T
Q  340 ctaagcactcctctacacttggattaagattctcacaattttcatcttctattgctacttctacatctcttgatataagacgtcggtccaaaatcgtttt 439  Q
    |||||||||||| | ||  |||| |||||||||||  |||| ||||||  ||| | |||||| ||||  |||||| |||| || ||||||||||| | ||    
T  10565738 ctaagcactcctttgcaggtggaataagattctcatgatttccatctttcatttcaacttctgcatccattgataaaagatgtgggtccaaaatcttctt 10565639  T
Q  440 aagattatcaggaaatgaaattgcaacaaagttatgcagattttgaccatcttcaaaaacttcattagcgggtcttctaccggtaagaattt 531  Q
    ||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| | | || || |||||||||||||||||| ||||    
T  10565638 aagattaccaggaaatgatattgcaacaaagttatgcagattttgaccatcttcaaaagcgtgatcagtgggtcttctaccggtaagcattt 10565547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 256 - 531
Target Start/End: Complemental strand, 10612529 - 10612254
Alignment:
Q  256 taagctctctagtgacatccacaatattcattctttcttttggtgattccattgtacaaataagtccaatcctaaaaagtgaaactaagcactcctctac 355  Q
    |||| |||||||| |||||||||||||||||||||||||| ||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||     
T  10612529 taagttctctagtaacatccacaatattcattctttctttgggtgattccattgaacaaagaagtccaatcctaaaaagtgaaactaagcactcctttaa 10612430  T
Q  356 acttggattaagattctcacaattttcatcttctattgctacttctacatctcttgatataagacgtcggtccaaaatcgttttaagattatcaggaaat 455  Q
    ||||||| ||||||||||||  ||| |||||| |||| |||||||| ||| | |||| | |||| || ||||||| ||| || |||||||| |||||||     
T  10612429 acttggaataagattctcactctttccatcttgtatttctacttctgcatattttgacacaagatgtgggtccaagatctttataagattagcaggaaac 10612330  T
Q  456 gaaattgcaacaaagttatgcagattttgaccatcttcaaaaacttcattagcgggtcttctaccggtaagaattt 531  Q
        |||||||||||||||| ||||||||| ||||||||||  | |||| || |||||||||||||||||| ||||    
T  10612329 agtgttgcaacaaagttatgtagattttgatcatcttcaaatgcctcatcagtgggtcttctaccggtaagcattt 10612254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 240 - 531
Target Start/End: Original strand, 10739800 - 10740091
Alignment:
Q  240 gcctttctgattatgctaagctctctagtgacatccacaatattcattctttcttttggtgattccattgtacaaataagtccaatcctaaaaagtgaaa 339  Q
    ||||||| |||| || ||||||||  | | ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| |||||||||||||    
T  10739800 gcctttcggattgtgttaagctcttgattaacatccataatattcattctttctttcggtgattccattgaacaaataagtccaattctaaaaagtgaaa 10739899  T
Q  340 ctaagcactcctctacacttggattaagattctcacaattttcatcttctattgctacttctacatctcttgatataagacgtcggtccaaaatcgtttt 439  Q
    ||||| | |||||||| |  |||   ||| || | |  ||| |||||| ||||| ||||||||||||||||| |  |||| || |||||||||||  | |    
T  10739900 ctaaggattcctctaccccaggaactagaatcgctcggtttccatcttgtattgttacttctacatctcttgcttcaagatgtgggtccaaaatctctat 10739999  T
Q  440 aagattatcaggaaatgaaattgcaacaaagttatgcagattttgaccatcttcaaaaacttcattagcgggtcttctaccggtaagaattt 531  Q
    ||  ||| ||||||| ||| |||| ||||||||||| |||||||||||||||| ||||||||||| || |||||||||||||||||| ||||    
T  10740000 aatgttaccaggaaacgaagttgctacaaagttatgtagattttgaccatcttgaaaaacttcatcagtgggtcttctaccggtaagtattt 10740091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 256 - 531
Target Start/End: Original strand, 10762231 - 10762506
Alignment:
Q  256 taagctctctagtgacatccacaatattcattctttcttttggtgattccattgtacaaataagtccaatcctaaaaagtgaaactaagcactcctctac 355  Q
    ||||||||  ||| ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| |||||||||||||||||| | ||||||||    
T  10762231 taagctcttgagtaacatccataatattcattctttctttcggtgattccattgaacaaataagtccaattctaaaaagtgaaactaaggattcctctac 10762330  T
Q  356 acttggattaagattctcacaattttcatcttctattgctacttctacatctcttgatataagacgtcggtccaaaatcgttttaagattatcaggaaat 455  Q
     | || | ||||| || | |  ||| |||||| | ||| ||||||||||||||||| |  |||| || ||||||||||   | |||  ||| ||||||||    
T  10762331 ccctgcaataagaatcgctcggtttccatcttgttttgttacttctacatctcttgcttcaagatgtgggtccaaaatatctataatgttaccaggaaat 10762430  T
Q  456 gaaattgcaacaaagttatgcagattttgaccatcttcaaaaacttcattagcgggtcttctaccggtaagaattt 531  Q
    |||  ||| |||||||||||||||||||||||||||| ||||||||||| || |||||||||||| ||||| ||||    
T  10762431 gaagctgctacaaagttatgcagattttgaccatcttgaaaaacttcatcagtgggtcttctaccagtaagtattt 10762506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 242 - 531
Target Start/End: Original strand, 10716365 - 10716642
Alignment:
Q  242 ctttctgattatgctaagctctctagtgacatccacaatattcattctttcttttggtgattccattgtacaaataagtccaatcctaaaaagtgaaact 341  Q
    ||||||||||||| | ||||||||||||||||||| |||||||||||||||| | ||||||||||||||||||| |||||||||||| ||||| ||||||    
T  10716365 ctttctgattatgttgagctctctagtgacatccataatattcattctttctatcggtgattccattgtacaaacaagtccaatcctgaaaagagaaact 10716464  T
Q  342 aagcactcctctacacttggattaagattctcacaattttcatcttctattgctacttctacatctcttgatataagacgtcggtccaaaatcgttttaa 441  Q
    ||||| || | |||    ||| ||||||||||       |   |||| ||     ||||| |||||||||||| |||| || | ||||||||| || |||    
T  10716465 aagcattcatttaccgcaggaataagattctc-------tatgcttccat-----cttctgcatctcttgatacaagatgtggatccaaaatctttataa 10716552  T
Q  442 gattatcaggaaatgaaattgcaacaaagttatgcagattttgaccatcttcaaaaacttcattagcgggtcttctaccggtaagaattt 531  Q
    |||| ||||||||||||  |||||||||||||||||||||||||||||||| ||||| ||||| || |||||||||||||||||| ||||    
T  10716553 gattgtcaggaaatgaagatgcaacaaagttatgcagattttgaccatcttgaaaaaattcatcagtgggtcttctaccggtaagcattt 10716642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 247 - 531
Target Start/End: Complemental strand, 7193834 - 7193550
Alignment:
Q  247 tgattatgctaagctctctagtgacatccacaatattcattctttcttttggtgattccattgtacaaataagtccaatcctaaaaagtgaaactaagca 346  Q
    |||||||||| |  |||||  |||||||||| |||||||||||||||||||||||||||| || ||||  |||||||||||||||||||||||||| |||    
T  7193834 tgattatgcttaagtctctgatgacatccactatattcattctttcttttggtgattccactgaacaagcaagtccaatcctaaaaagtgaaactacgca 7193735  T
Q  347 ctcctctacacttggattaagattctcacaattttcatcttctattgctacttctacatctcttgatataagacgtcggtccaaaatcgttttaagatta 446  Q
    || ||||||| ||||| | | |||  |||  ||| |||||||||||| | |||||| || ||||| || ||||  | ||||||||||   | ||||||||    
T  7193734 cttctctacatttggagtgaaatttccactgtttccatcttctattgttgcttctatatttcttggtacaagatttgggtccaaaatatgtataagatta 7193635  T
Q  447 tcaggaaatgaaattgcaacaaagttatgcagattttgaccatcttcaaaaacttcattagcgggtcttctaccggtaagaattt 531  Q
    | ||| || |||||| |||||||  || | |||||||||||||  ||||| | |||||   | ||||| || |||||||||||||    
T  7193634 ttaggcaacgaaatttcaacaaaaatacgtagattttgaccattgtcaaacatttcatctaccggtctccttccggtaagaattt 7193550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 238 - 531
Target Start/End: Original strand, 10659458 - 10659751
Alignment:
Q  238 atgcctttctgattatgctaagctctctagtgacatccacaatattcattctttcttttggtgattccattgtacaaataagtccaatcctaaaaagtga 337  Q
    |||||||| |||||||||| | |||||| |||||||| || ||||||||||||||||||||||||| || || |||   ||||||||||| |||||||||    
T  10659458 atgcctttttgattatgcttaactctctggtgacatcaactatattcattctttcttttggtgatttcactgaacatgcaagtccaatccgaaaaagtga 10659557  T
Q  338 aactaagcactcctctacacttggattaagattctcacaattttcatcttctattgctacttctacatctcttgatataagacgtcggtccaaaatcgtt 437  Q
    ||||||||||| ||||||  |||||   | |||  |||  ||| | |||||||||    ||||| ||| ||||| || |||| || |||||||||||  |    
T  10659558 aactaagcacttctctacgattggagggaaatttccactctttccttcttctattttggcttcttcatttcttggtacaagatgtgggtccaaaatctgt 10659657  T
Q  438 ttaagattatcaggaaatgaaattgcaacaaagttatgcagattttgaccatcttcaaaaacttcattagcgggtcttctaccggtaagaattt 531  Q
      || |||||  |||||||||||| |||||||  |||||||||||||||| |||||||| | |||||  |  |||||||| |||||||| ||||    
T  10659658 aaaatattatttggaaatgaaatttcaacaaatatatgcagattttgaccctcttcaaacatttcatccgttggtcttcttccggtaagcattt 10659751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 258 - 496
Target Start/End: Original strand, 9827352 - 9827590
Alignment:
Q  258 agctctctagtgacatccacaatattcattctttcttttggtgattccattgtacaaataagtccaatcctaaaaagtgaaactaagcactcctctacac 357  Q
    ||||||||||| ||||| || || |||||||||||||||||||||||  ||| |||   |||||||||||| |||| |||||||||||| | || ||||     
T  9827352 agctctctagtaacatctactatgttcattctttcttttggtgattctcttgaacaggcaagtccaatccttaaaactgaaactaagcaattctttacag 9827451  T
Q  358 ttggattaagattctcacaattttcatcttctattgctacttctacatctcttgatataagacgtcggtccaaaatcgttttaagattatcaggaaatga 457  Q
     |||| |||||||||||| |||| |||||||||||||| ||||| ||||||||| || || | || ||| |||||||  |  |||||||||||  |||||    
T  9827452 ctggaataagattctcactatttccatcttctattgctgcttcttcatctcttggtacaaaatgttggttcaaaatctgtgaaagattatcagctaatga 9827551  T
Q  458 aattgcaacaaagttatgcagattttgaccatcttcaaa 496  Q
    | || || ||||  || | |||||||||||||| |||||    
T  9827552 actttcagcaaacgtacgtagattttgaccatcctcaaa 9827590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 258 - 496
Target Start/End: Original strand, 9835721 - 9835959
Alignment:
Q  258 agctctctagtgacatccacaatattcattctttcttttggtgattccattgtacaaataagtccaatcctaaaaagtgaaactaagcactcctctacac 357  Q
    ||||||||||| ||||| || || |||||||||||||||||||||||  ||| |||   |||||||||||| |||| |||||||||||| | || ||||     
T  9835721 agctctctagtaacatctactatgttcattctttcttttggtgattctcttgaacaggcaagtccaatccttaaaactgaaactaagcaattctttacag 9835820  T
Q  358 ttggattaagattctcacaattttcatcttctattgctacttctacatctcttgatataagacgtcggtccaaaatcgttttaagattatcaggaaatga 457  Q
     |||| |||||||||||| |||| |||||||||||||| ||||| ||||||||| || || | || |||||||||||  |  ||||||| |||  |||||    
T  9835821 ctggaataagattctcactatttccatcttctattgctgcttcttcatctcttggtacaaaatgttggtccaaaatctgtgaaagattaccagctaatga 9835920  T
Q  458 aattgcaacaaagttatgcagattttgaccatcttcaaa 496  Q
    | || || ||||  || | |||||||||||||| |||||    
T  9835921 actttcagcaaacgtacgtagattttgaccatcctcaaa 9835959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 282 - 496
Target Start/End: Original strand, 10651619 - 10651833
Alignment:
Q  282 ttcattctttcttttggtgattccattgtacaaataagtccaatcctaaaaagtgaaactaagcactcctctacacttggattaagattctcacaatttt 381  Q
    |||||||||||||||||||||| || || ||||  |||||||||||| |||||||||||||| |||| ||||||| ||||| | | |||  |||| |||     
T  10651619 ttcattctttcttttggtgatttcactgaacaagcaagtccaatcctgaaaagtgaaactaaacacttctctacagttggagtgaaatttccacagtttc 10651718  T
Q  382 catcttctattgctacttctacatctcttgatataagacgtcggtccaaaatcgttttaagattatcaggaaatgaaattgcaacaaagttatgcagatt 481  Q
    | ||||||||| || ||||| ||| ||||| || |||| || | |||||||||  | ||| ||||| ||||||||||||| |||||||  |||||| |||    
T  10651719 cttcttctatttcttcttcttcatttcttggtacaagatgtggatccaaaatctgtataatattattaggaaatgaaattccaacaaacatatgcaaatt 10651818  T
Q  482 ttgaccatcttcaaa 496  Q
    |||||| ||||||||    
T  10651819 ttgaccttcttcaaa 10651833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 445 - 531
Target Start/End: Original strand, 11048241 - 11048327
Alignment:
Q  445 tatcaggaaatgaaattgcaacaaagttatgcagattttgaccatcttcaaaaacttcattagcgggtcttctaccggtaagaattt 531  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||  | |||||||||||||||||| ||||    
T  11048241 tatcaggaagtgaaattgcaacaaagttatgcagattttgaccatcttcaaaaacttcatgggtgggtcttctaccggtaagcattt 11048327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 323 - 419
Target Start/End: Original strand, 10760796 - 10760892
Alignment:
Q  323 aatcctaaaaagtgaaactaagcactcctctacacttggattaagattctcacaattttcatcttctattgctacttctacatctcttgatataaga 419  Q
    ||||||||| |||||||||||||||| ||||||||||||| |||||||| ||   ||| |||||| |||| |||||| |||||||||||||| ||||    
T  10760796 aatcctaaacagtgaaactaagcacttctctacacttggaataagattcccattgtttccatcttgtatttctacttttacatctcttgatacaaga 10760892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 283 - 393
Target Start/End: Original strand, 10587895 - 10588005
Alignment:
Q  283 tcattctttcttttggtgattccattgtacaaataagtccaatcctaaaaagtgaaactaagcactcctctacacttggattaagattctcacaattttc 382  Q
    ||||||||||||||||||||||||||| ||||  |||||||||||| | ||||||||||||||||| |||   |  |||| |||||||||||  || | |    
T  10587895 tcattctttcttttggtgattccattgaacaagcaagtccaatccttagaagtgaaactaagcacttctccttagctggaataagattctcattatgtcc 10587994  T
Q  383 atcttctattg 393  Q
    |||||||||||    
T  10587995 atcttctattg 10588005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 242 - 346
Target Start/End: Original strand, 19605243 - 19605347
Alignment:
Q  242 ctttctgattatgctaagctctctagtgacatccacaatattcattctttcttttggtgattccattgtacaaataagtccaatcctaaaaagtgaaact 341  Q
    ||||||||||||| | |||||||||||| ||||  | ||||||||||||||||| || |||||||| | |||   |||||||||||||||||  |||||     
T  19605243 ctttctgattatgtttagctctctagtggcatcttctatattcattctttctttgggagattccatcgaacaggcaagtccaatcctaaaaatggaaaca 19605342  T
Q  342 aagca 346  Q
    |||||    
T  19605343 aagca 19605347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 241 - 344
Target Start/End: Complemental strand, 10559732 - 10559629
Alignment:
Q  241 cctttctgattatgctaagctctctagtgacatccacaatattcattctttcttttggtgattccattgtacaaataagtccaatcctaaaaagtgaaac 340  Q
    |||||||||| ||| | || ||||||||||||||||  ||||||||||||| | |||| |||||||  | |||   ||||||||||||||| ||||||||    
T  10559732 cctttctgatcatgtttagttctctagtgacatccaatatattcattctttgtgttggcgattccaccgaacatgcaagtccaatcctaaagagtgaaac 10559633  T
Q  341 taag 344  Q
    ||||    
T  10559632 taag 10559629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 270 - 356
Target Start/End: Complemental strand, 10551606 - 10551520
Alignment:
Q  270 acatccacaatattcattctttcttttggtgattccattgtacaaataagtccaatcctaaaaagtgaaactaagcactcctctaca 356  Q
    ||||| || |||||||||||||||||||||||||||| || ||||  |||| ||||||||| |||||||| ||| || | |||||||    
T  10551606 acatcaaccatattcattctttcttttggtgattccactgaacaagaaagtgcaatcctaagaagtgaaagtaaacatttctctaca 10551520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 416 - 523
Target Start/End: Original strand, 10588010 - 10588117
Alignment:
Q  416 aagacgtcggtccaaaatcgttttaagattatcaggaaatgaaattgcaacaaagttatgcagattttgaccatcttcaaaaacttcattagcgggtctt 515  Q
    |||| || |||||||||||  | ||||||||||  |||||||| || |||||||  |||| |||||||||||||||||||| | |||||  | |||||||    
T  10588010 aagatgtgggtccaaaatctgtataagattatcttgaaatgaactttcaacaaacatatgtagattttgaccatcttcaaacatttcatctgtgggtctt 10588109  T
Q  516 ctaccggt 523  Q
    || |||||    
T  10588110 cttccggt 10588117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 120 - 183
Target Start/End: Complemental strand, 10566012 - 10565949
Alignment:
Q  120 cacctgaaattcaaatcaagaggaagctcgttattgcctttgtattttgtaggttaggaatttt 183  Q
    ||||||||||||||||||||| |||   | ||||| || ||||||||||||| |||||||||||    
T  10566012 cacctgaaattcaaatcaagaagaaatccattattaccattgtattttgtagtttaggaatttt 10565949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 243 - 300
Target Start/End: Original strand, 9849623 - 9849680
Alignment:
Q  243 tttctgattatgctaagctctctagtgacatccacaatattcattctttcttttggtg 300  Q
    |||||||||||| | |||||||||||||||||||   ||||||||||| |||| ||||    
T  9849623 tttctgattatgtttagctctctagtgacatccattgtattcattcttgctttcggtg 9849680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 148; Significance: 7e-78; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 256 - 531
Target Start/End: Complemental strand, 12958876 - 12958601
Alignment:
Q  256 taagctctctagtgacatccacaatattcattctttcttttggtgattccattgtacaaataagtccaatcctaaaaagtgaaactaagcactcctctac 355  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||| || ||| | |||||||||||||||||||||||||||||||||||||||    
T  12958876 taagctctctagtgacatcgacaatattcattctttcttttggtgattccaatgaacataaaagtccaatcctaaaaagtgaaactaagcactcctctac 12958777  T
Q  356 acttggattaagattctcacaattttcatcttctattgctacttctacatctcttgatataagacgtcggtccaaaatcgttttaagattatcaggaaat 455  Q
    | ||||| ||||| |||||  |||| |||||||| ||||| | ||| || |||||| || |||| || | ||||| ||| || | |||||||||||||||    
T  12958776 agttggaataagaatctcatgatttccatcttctcttgctccatcttcagctcttggtaaaagatgtggatccaacatctttattagattatcaggaaat 12958677  T
Q  456 gaaattgcaacaaagttatgcagattttgaccatcttcaaaaacttcattagcgggtcttctaccggtaagaattt 531  Q
    ||| ||| ||||||||||||||||||||||||||||||||||| ||||| || |||||||||||| ||||| ||||    
T  12958676 gaatttgtaacaaagttatgcagattttgaccatcttcaaaaagttcatcagtgggtcttctaccagtaagcattt 12958601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 256 - 531
Target Start/End: Complemental strand, 12907988 - 12907713
Alignment:
Q  256 taagctctctagtgacatccacaatattcattctttcttttggtgattccattgtacaaataagtccaatcctaaaaagtgaaactaagcactcctctac 355  Q
    ||||||||||| ||||||| |||||||||||||||||||||| |||||||| || ||| | ||||||||||||||||||||||  |||||||||||||||    
T  12907988 taagctctctattgacatctacaatattcattctttcttttgttgattccaatgaacataaaagtccaatcctaaaaagtgaagttaagcactcctctac 12907889  T
Q  356 acttggattaagattctcacaattttcatcttctattgctacttctacatctcttgatataagacgtcggtccaaaatcgttttaagattatcaggaaat 455  Q
    | ||||| ||||| |||||  | || ||||||||||| || ||||| || |||||| || |||| || | ||||||||| || |||||||||||||||||    
T  12907888 atttggaataagaatctcatgaattccatcttctattcctccttcttcagctcttggtaaaagatgtggatccaaaatctttataagattatcaggaaat 12907789  T
Q  456 gaaattgcaacaaagttatgcagattttgaccatcttcaaaaacttcattagcgggtcttctaccggtaagaattt 531  Q
    ||||||| ||||||||||||||||||||||||||||||||||| ||||| || |||||||||||| ||||| ||||    
T  12907788 gaaattgtaacaaagttatgcagattttgaccatcttcaaaaagttcatcagtgggtcttctaccagtaagcattt 12907713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 256 - 531
Target Start/End: Complemental strand, 12900371 - 12900093
Alignment:
Q  256 taagctctctagtgacatccacaatattcattctttcttttggtgattccattgtacaaataagtccaatcctaaaaagtgaaactaagcactcctctac 355  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||  | ||| | |||| ||||||||| |||||||||||||||||| ||||     
T  12900371 taagctctctagtgacatccacaatattcattctttcttttggtgattccaaagaacataaaagtgcaatcctaagaagtgaaactaagcactcttctat 12900272  T
Q  356 acttggattaagattctcacaattttcatcttctattg---ctacttctacatctcttgatataagacgtcggtccaaaatcgttttaagattatcagga 452  Q
    | ||||| || || |||||  |||| ||||||||||||   ||| |||| || |||||| || |||| || | ||||||||| || ||||||||||||||    
T  12900271 agttggaatatgaatctcatgatttccatcttctattgctcctaattcttcagctcttggtaaaagatgtggatccaaaatctttataagattatcagga 12900172  T
Q  453 aatgaaattgcaacaaagttatgcagattttgaccatcttcaaaaacttcattagcgggtcttctaccggtaagaattt 531  Q
    |||||||||| ||||||||||||||||||||||||||||||||||| ||||| || |||||||||||| ||||| ||||    
T  12900171 aatgaaattgtaacaaagttatgcagattttgaccatcttcaaaaagttcatcagtgggtcttctaccagtaagcattt 12900093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 256 - 531
Target Start/End: Complemental strand, 12933077 - 12932802
Alignment:
Q  256 taagctctctagtgacatccacaatattcattctttcttttggtgattccattgtacaaataagtccaatcctaaaaagtgaaactaagcactcctctac 355  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||  | ||| | |||| ||||||||| ||||||||| ||||| || ||||     
T  12933077 taagctctctagtgacatccacaatattcattctttcttttggtgattccaaagaacataaaagtgcaatcctaagaagtgaaacaaagcaatcttctat 12932978  T
Q  356 acttggattaagattctcacaattttcatcttctattgctacttctacatctcttgatataagacgtcggtccaaaatcgttttaagattatcaggaaat 455  Q
    | ||||| || || |||||  |||| |||||||||||||| ||||| || |||||| || |||| || | ||||||||| || |||||||||||||||||    
T  12932977 agttggaatatgaatctcatgatttccatcttctattgctccttcttcagctcttggtaaaagatgtggatccaaaatctttataagattatcaggaaat 12932878  T
Q  456 gaaattgcaacaaagttatgcagattttgaccatcttcaaaaacttcattagcgggtcttctaccggtaagaattt 531  Q
    ||||||| ||||||||||||||||||||||||||||||||||| |||||  | |||||||||||| ||||| ||||    
T  12932877 gaaattgtaacaaagttatgcagattttgaccatcttcaaaaagttcatcggtgggtcttctaccagtaagcattt 12932802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 256 - 531
Target Start/End: Complemental strand, 12949417 - 12949156
Alignment:
Q  256 taagctctctagtgacatccacaatattcattctttcttttggtgattccattgtacaaataagtccaatcctaaaaa-gtgaaactaagcactcctcta 354  Q
    ||||||||||||||||||||||||||||||||||||| |||| |||||||| || ||||| ||||||||||||||||| | |||||| ||||||| ||||    
T  12949417 taagctctctagtgacatccacaatattcattctttcatttgatgattccaatgaacaaaaaagtccaatcctaaaaaggggaaactgagcactcttcta 12949318  T
Q  355 cacttggattaagattctcacaattttcatcttctattgctacttctacatctcttgatataagacgtcggtccaaaatcgttttaagattatcaggaaa 454  Q
     | ||||| ||||| |||||  |||| ||||||               || |||||| || |||| || | ||||||||| ||   | |||||  |||||    
T  12949317 tagttggaataagaatctcatgatttccatctt---------------cagctcttggtaaaagatgtggatccaaaatctttacgaaattattgggaaa 12949233  T
Q  455 tgaaattgcaacaaagttatgcagattttgaccatcttcaaaaacttcattagcgggtcttctaccggtaagaattt 531  Q
    |||||||  ||||||||||||||||||||||||||||||||||| ||||| || |||||||||||| ||||| ||||    
T  12949232 tgaaattttaacaaagttatgcagattttgaccatcttcaaaaagttcatcagtgggtcttctaccagtaagcattt 12949156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 128; Significance: 6e-66; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 256 - 531
Target Start/End: Original strand, 17922808 - 17923083
Alignment:
Q  256 taagctctctagtgacatccacaatattcattctttcttttggtgattccattgtacaaataagtccaatcctaaaaagtgaaactaagcactcctctac 355  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||| ||||||||||||||||||||    
T  17922808 taagctctctagtgacatccacaatattcattctttcttttggtgattccaatgaacaaaaaagtccaatcctaaaaagggaaactaagcactcctctac 17922907  T
Q  356 acttggattaagattctcacaattttcatcttctattgctacttctacatctcttgatataagacgtcggtccaaaatcgttttaagattatcaggaaat 455  Q
    | |||||  |||| |||||  |||| ||||||||  |||| | ||| || |||||| || |||| || | ||||||||| || |||||||   |||||||    
T  17922908 agttggaagaagaatctcatgatttccatcttctcgtgctccatcttcagctcttggtaaaagatgtggatccaaaatctttataagattgcaaggaaat 17923007  T
Q  456 gaaattgcaacaaagttatgcagattttgaccatcttcaaaaacttcattagcgggtcttctaccggtaagaattt 531  Q
    ||||||| |||||||||||| ||||||||||| |||| ||||| |||||  | ||||||||| |||||||| ||||    
T  17923008 gaaattgtaacaaagttatgtagattttgaccgtctttaaaaagttcatcggtgggtcttcttccggtaagcattt 17923083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0692 (Bit Score: 74; Significance: 1e-33; HSPs: 1)
Name: scaffold0692
Description:

Target: scaffold0692; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 426 - 531
Target Start/End: Complemental strand, 7921 - 7816
Alignment:
Q  426 tccaaaatcgttttaagattatcaggaaatgaaattgcaacaaagttatgcagattttgaccatcttcaaaaacttcattagcgggtcttctaccggtaa 525  Q
    ||||||||| || |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| || |||||||||||| ||||    
T  7921 tccaaaatctttataagattatcaggaaatgaaattgtaacaaagttatgcagattttgaccatcttcaaaaagttcatcagtgggtcttctaccagtaa 7822  T
Q  526 gaattt 531  Q
    | ||||    
T  7821 gcattt 7816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 256 - 356
Target Start/End: Original strand, 31466548 - 31466648
Alignment:
Q  256 taagctctctagtgacatccacaatattcattctttcttttggtgattccattgtacaaataagtccaatcctaaaaagtgaaactaagcactcctctac 355  Q
    ||||||||||| |||| || || ||| |||| |||||||||||||||||||||| ||||  |||| |||| ||||||||||||| ||| || | ||||||    
T  31466548 taagctctctaatgacttcaaccatactcatcctttcttttggtgattccattgaacaaccaagtgcaatactaaaaagtgaaattaaacatttctctac 31466647  T
Q  356 a 356  Q
    |    
T  31466648 a 31466648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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