View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2980_low_20 (Length: 237)
Name: NF2980_low_20
Description: NF2980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2980_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 2 - 221
Target Start/End: Original strand, 41785520 - 41785740
Alignment:
| Q |
2 |
ttgatttttccctaatctttagtaacatgctaatgacatttgagttgatgatttgttcctttcggttctgttttatttttcatttagcaagaaacatcaa |
101 |
Q |
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| T |
41785520 |
ttgatttttccctaatctatagtaacatgctaatgacatttgagttgatgatttgttcctttcggttctgttttatttttcatttagcaagaaacataaa |
41785619 |
T |
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| Q |
102 |
aa-aattaagcagttagagagtttggtgagcaaaattgaagattcgttaatgtttaagtgaatcttaaattaatcataattaactgccaaaacaatatca |
200 |
Q |
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| T |
41785620 |
aaaaattaagcagttagagagtttggtgagcagaattgaagattcgttaatgtttgagtgaatcttaaattaaccataattaactgccaaaacaatatca |
41785719 |
T |
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| Q |
201 |
aattcgttcacatcttacatc |
221 |
Q |
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||||||||||||||||||||| |
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| T |
41785720 |
aattcgttcacatcttacatc |
41785740 |
T |
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