View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2980_low_21 (Length: 236)
Name: NF2980_low_21
Description: NF2980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2980_low_21 |
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| [»] scaffold0202 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 97 - 174
Target Start/End: Complemental strand, 31056576 - 31056501
Alignment:
| Q |
97 |
ataaggttatataacatgtatatggggttcaacatctactcttcctccggataatccaaatcatgtaagatctacaac |
174 |
Q |
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| T |
31056576 |
ataaggttatataacatgtatacgg--ttcaacatctactcttcctccatataatccaaatcatgtaagatctacaac |
31056501 |
T |
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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 172 - 221
Target Start/End: Complemental strand, 31055710 - 31055664
Alignment:
| Q |
172 |
aacaaccaaaccttatcccactaaaggtggtcgtcggtcatagatcaaat |
221 |
Q |
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| T |
31055710 |
aacaaccaaaccttatcccactaaaggtg---gtcggtcatagatcaaat |
31055664 |
T |
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Target: scaffold0202 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: scaffold0202
Description:
Target: scaffold0202; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 122 - 174
Target Start/End: Original strand, 6267 - 6319
Alignment:
| Q |
122 |
ggttcaacatctactcttcctccggataatccaaatcatgtaagatctacaac |
174 |
Q |
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| T |
6267 |
ggttcaacatctgcccttcctccagatgatccaaatcatgtaagatctacaac |
6319 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0202; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 82 - 174
Target Start/End: Complemental strand, 19649 - 19558
Alignment:
| Q |
82 |
atatcatacgactcaataaggttatataacatgtatatggggttcaacatctactcttcctccggataatccaaatcatgtaagatctacaac |
174 |
Q |
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| T |
19649 |
atatgatacgattcaaaaaggtgatatatcatgtatgaggt-ttcaacatatgcccttcctccagatgatccaaatcatgtaagatctacaac |
19558 |
T |
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