View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2980_low_22 (Length: 236)

Name: NF2980_low_22
Description: NF2980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2980_low_22
NF2980_low_22
[»] chr7 (13 HSPs)
chr7 (44-222)||(41862394-41862571)
chr7 (30-156)||(41759681-41759806)
chr7 (42-156)||(5991490-5991604)
chr7 (67-155)||(28694149-28694237)
chr7 (69-136)||(19377331-19377398)
chr7 (42-136)||(22206759-22206853)
chr7 (42-136)||(22227886-22227980)
chr7 (67-156)||(30852273-30852360)
chr7 (67-136)||(815083-815152)
chr7 (31-155)||(35300502-35300626)
chr7 (70-154)||(25688291-25688375)
chr7 (2-36)||(4843379-4843413)
chr7 (85-131)||(21932894-21932940)
[»] chr5 (25 HSPs)
chr5 (8-134)||(13695000-13695126)
chr5 (44-155)||(39605902-39606012)
chr5 (8-154)||(13694766-13694911)
chr5 (42-155)||(16567720-16567833)
chr5 (31-128)||(16667556-16667653)
chr5 (42-154)||(37779595-37779706)
chr5 (42-151)||(32953741-32953850)
chr5 (42-154)||(21068927-21069039)
chr5 (44-154)||(42989463-42989574)
chr5 (72-154)||(37607386-37607467)
chr5 (42-155)||(43228716-43228828)
chr5 (67-154)||(1672585-1672671)
chr5 (67-154)||(13942881-13942968)
chr5 (44-154)||(30248895-30249005)
chr5 (44-154)||(34443896-34444006)
chr5 (31-157)||(34846282-34846408)
chr5 (42-127)||(7162157-7162242)
chr5 (67-136)||(36234669-36234738)
chr5 (42-110)||(17192743-17192811)
chr5 (55-102)||(7159676-7159723)
chr5 (67-138)||(8214711-8214782)
chr5 (42-136)||(9738320-9738414)
chr5 (101-154)||(767231-767283)
chr5 (44-153)||(2476335-2476444)
chr5 (44-156)||(15503845-15503956)
[»] chr8 (13 HSPs)
chr8 (42-154)||(8968260-8968372)
chr8 (67-153)||(34282995-34283081)
chr8 (8-136)||(12478083-12478211)
chr8 (44-154)||(38214689-38214799)
chr8 (44-154)||(21138133-21138243)
chr8 (70-156)||(27321951-27322036)
chr8 (85-154)||(39431790-39431859)
chr8 (31-155)||(3384093-3384216)
chr8 (67-155)||(43843106-43843193)
chr8 (32-110)||(31500904-31500981)
chr8 (2-36)||(13243169-13243203)
chr8 (92-136)||(376383-376427)
chr8 (44-136)||(24964981-24965073)
[»] chr1 (25 HSPs)
chr1 (67-155)||(49898344-49898432)
chr1 (44-136)||(6802175-6802267)
chr1 (46-154)||(4773937-4774045)
chr1 (44-124)||(4642145-4642225)
chr1 (42-154)||(14727248-14727360)
chr1 (44-154)||(11647071-11647180)
chr1 (67-153)||(44238957-44239042)
chr1 (67-154)||(24645984-24646070)
chr1 (85-136)||(41751919-41751970)
chr1 (44-154)||(25007394-25007504)
chr1 (44-154)||(37154065-37154175)
chr1 (44-154)||(37574864-37574973)
chr1 (2-38)||(6802102-6802138)
chr1 (44-156)||(27584088-27584200)
chr1 (89-141)||(28463069-28463121)
chr1 (42-110)||(33469014-33469082)
chr1 (47-126)||(26686504-26686583)
chr1 (2-36)||(9527120-9527154)
chr1 (2-36)||(24646128-24646162)
chr1 (44-110)||(25011611-25011677)
chr1 (2-36)||(34459184-34459218)
chr1 (85-154)||(4163372-4163441)
chr1 (31-154)||(6331606-6331727)
chr1 (44-108)||(9527021-9527085)
chr1 (44-124)||(16640361-16640441)
[»] chr2 (14 HSPs)
chr2 (42-154)||(34756610-34756722)
chr2 (67-154)||(304220-304307)
chr2 (66-155)||(33909438-33909526)
chr2 (44-136)||(42152602-42152694)
chr2 (44-125)||(28816651-28816732)
chr2 (44-152)||(41010409-41010516)
chr2 (44-155)||(4570554-4570664)
chr2 (67-155)||(2475752-2475840)
chr2 (44-154)||(13203698-13203808)
chr2 (2-36)||(17249394-17249428)
chr2 (44-154)||(41114944-41115054)
chr2 (2-36)||(25563011-25563045)
chr2 (70-136)||(27701998-27702064)
chr2 (70-110)||(17148756-17148796)
[»] chr6 (9 HSPs)
chr6 (44-155)||(5582406-5582516)
chr6 (67-136)||(34188739-34188808)
chr6 (70-136)||(339284-339350)
chr6 (45-155)||(10397868-10397978)
chr6 (67-157)||(28614481-28614571)
chr6 (42-155)||(9047000-9047112)
chr6 (67-151)||(14939008-14939092)
chr6 (44-151)||(34249088-34249195)
chr6 (45-127)||(2960642-2960724)
[»] chr3 (15 HSPs)
chr3 (31-154)||(41218445-41218568)
chr3 (44-154)||(9600287-9600396)
chr3 (34-136)||(41358692-41358794)
chr3 (31-154)||(26278289-26278410)
chr3 (44-136)||(54846004-54846096)
chr3 (44-154)||(41199965-41200075)
chr3 (67-151)||(33179222-33179306)
chr3 (44-158)||(25391899-25392013)
chr3 (44-154)||(38239390-38239499)
chr3 (42-155)||(37516566-37516678)
chr3 (2-38)||(41358620-41358656)
chr3 (44-156)||(53651833-53651944)
chr3 (2-36)||(33179130-33179164)
chr3 (44-110)||(47511719-47511785)
chr3 (42-119)||(7500915-7500992)
[»] chr4 (22 HSPs)
chr4 (42-156)||(25237493-25237607)
chr4 (46-156)||(50383817-50383927)
chr4 (67-154)||(32828146-32828233)
chr4 (43-156)||(9694017-9694129)
chr4 (31-136)||(31929105-31929210)
chr4 (31-136)||(11827088-11827193)
chr4 (85-154)||(36947447-36947515)
chr4 (31-155)||(2576090-2576213)
chr4 (42-154)||(15034546-15034658)
chr4 (31-154)||(4728477-4728600)
chr4 (31-110)||(46645566-46645645)
chr4 (67-154)||(52373670-52373756)
chr4 (44-154)||(2017512-2017622)
chr4 (44-154)||(6017047-6017157)
chr4 (67-153)||(49744972-49745057)
chr4 (44-155)||(4552115-4552226)
chr4 (88-154)||(8901735-8901800)
chr4 (2-36)||(25237652-25237686)
chr4 (31-136)||(9003505-9003610)
chr4 (42-151)||(14044279-14044388)
chr4 (67-155)||(31364066-31364153)
chr4 (44-136)||(41972512-41972604)
[»] scaffold0075 (1 HSPs)
scaffold0075 (45-134)||(6861-6950)
[»] scaffold0108 (1 HSPs)
scaffold0108 (90-154)||(21119-21183)
[»] scaffold0638 (1 HSPs)
scaffold0638 (42-136)||(4047-4141)
[»] scaffold0021 (1 HSPs)
scaffold0021 (67-136)||(109409-109478)


Alignment Details
Target: chr7 (Bit Score: 143; Significance: 3e-75; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 44 - 222
Target Start/End: Original strand, 41862394 - 41862571
Alignment:
Q  44 aaatccgcagaaaaagcaagagattctagtaatggctgaagttgctacaaagaaagtaggagctgagtatgggctagtgcccaggctagctggagtttgg 143  Q
    ||||||| ||||||| |||||||| ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| |||||||| ||||||    
T  41862394 aaatccgtagaaaaaacaagagatactagtaatggctgaatttgctgcaaagaaagtaggagctgagtatgggctagtgcccagactagctgg-gtttgg 41862492  T
Q  144 ctccgcccctgctgcattctaaacctctcacttattcagtttttccacaatgttgcaactaataaagacagttaattgt 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  41862493 ctccgcccctgctgcattctaaacctctcacttattcagtttttccacaatgttgcaactaatgaagacagttaattgt 41862571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 30 - 156
Target Start/End: Original strand, 41759681 - 41759806
Alignment:
Q  30 caaaatccgaaagtaaatccgcagaaaaagcaagagattctagtaatggctgaagttgctacaaagaaagtaggagctgagtatgggctagtgcccaggc 129  Q
    ||||||||  ||||||||| |||  |||||| | |  |||||||||||||||   |||||||||||||||| |||||||||  |||||||||||||||||    
T  41759681 caaaatccacaagtaaatctgcaagaaaagctaaaagttctagtaatggctgggcttgctacaaagaaagttggagctgagcctgggctagtgcccaggc 41759780  T
Q  130 tagctggagtttggctccgcccctgct 156  Q
    ||||||| |  ||||||||||||||||    
T  41759781 tagctgg-gggtggctccgcccctgct 41759806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 42 - 156
Target Start/End: Original strand, 5991490 - 5991604
Alignment:
Q  42 gtaaatccgcagaaaaagcaagagattctagtaatggctgaagttgctacaaagaaagtaggagctgagtatgggctagtgcccaggctagctggagttt 141  Q
    |||||||||||| |||| | | |  |||||||||||||||   |||||||||||||| | |||| ||||  |||||||||||||||||||||||| |  |    
T  5991490 gtaaatccgcaggaaaaactaaaagttctagtaatggctgggcttgctacaaagaaaattggagttgagcctgggctagtgcccaggctagctggggggt 5991589  T
Q  142 ggctccgcccctgct 156  Q
    |||||||||||||||    
T  5991590 ggctccgcccctgct 5991604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 67 - 155
Target Start/End: Original strand, 28694149 - 28694237
Alignment:
Q  67 ttctagtaatggctgaagttgctacaaagaaagtaggagctgagtatgggctagtgcccaggctagctggagtttggctccgcccctgc 155  Q
    ||||||||||||| ||| |||||||||||||||| |||||||||  |||| ||||| ||||||||||||| |  ||||| |||||||||    
T  28694149 ttctagtaatggcggaacttgctacaaagaaagttggagctgagcctgggttagtgtccaggctagctgggggatggctacgcccctgc 28694237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 69 - 136
Target Start/End: Complemental strand, 19377398 - 19377331
Alignment:
Q  69 ctagtaatggctgaagttgctacaaagaaagtaggagctgagtatgggctagtgcccaggctagctgg 136  Q
    ||||||||||||| ||||| |||||||||||| |||||||||  |||||||||||||| |||||||||    
T  19377398 ctagtaatggctggagttgttacaaagaaagttggagctgagcctgggctagtgcccaagctagctgg 19377331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 42 - 136
Target Start/End: Original strand, 22206759 - 22206853
Alignment:
Q  42 gtaaatccgcagaaaaagcaagagattctagtaatggctgaagttgctacaaagaaagtaggagctgagtatgggctagtgcccaggctagctgg 136  Q
    |||||||||||| |||||| | | ||| |||||||| |||   |||||||||||||| | |||||||||  ||||||||||||||||||||||||    
T  22206759 gtaaatccgcaggaaaagctaaaaattatagtaatgcctgggcttgctacaaagaaaattggagctgagcctgggctagtgcccaggctagctgg 22206853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 42 - 136
Target Start/End: Complemental strand, 22227980 - 22227886
Alignment:
Q  42 gtaaatccgcagaaaaagcaagagattctagtaatggctgaagttgctacaaagaaagtaggagctgagtatgggctagtgcccaggctagctgg 136  Q
    |||||||||||| |||||| | | ||| |||||||| |||   |||||||||||||| | |||||||||  ||||||||||||||||||||||||    
T  22227980 gtaaatccgcaggaaaagctaaaaattatagtaatgcctgggcttgctacaaagaaaattggagctgagcctgggctagtgcccaggctagctgg 22227886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 67 - 156
Target Start/End: Complemental strand, 30852360 - 30852273
Alignment:
Q  67 ttctagtaatggctgaagttgctacaaagaaagtaggagctgagtatgggctagtgcccaggctagctggagtttggctccgcccctgct 156  Q
    ||||||||||||||||  || ||||||||||| | |||||||||  |||||||||||||||||||||||| |  |||||| |||||||||    
T  30852360 ttctagtaatggctgagcttactacaaagaaaattggagctgagcctgggctagtgcccaggctagctgggg--tggctctgcccctgct 30852273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 67 - 136
Target Start/End: Original strand, 815083 - 815152
Alignment:
Q  67 ttctagtaatggctgaagttgctacaaagaaagtaggagctgagtatgggctagtgcccaggctagctgg 136  Q
    ||||||||||||||  | |||||||||||||||| |||||||||  ||||||||||||||||||| ||||    
T  815083 ttctagtaatggctagatttgctacaaagaaagttggagctgagcctgggctagtgcccaggctaactgg 815152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 31 - 155
Target Start/End: Original strand, 35300502 - 35300626
Alignment:
Q  31 aaaatccgaaagtaaatccgcagaaaaagcaagagattctagtaatggctgaagttgctacaaagaaagtaggagctgagtatgggctagtgcccaggct 130  Q
    |||||||| | |||||||||||| |||||| | | |||||||||||||  |   |||||||||||||||| |||||||||  |||||    |||||||||    
T  35300502 aaaatccgcaggtaaatccgcaggaaaagctaaacattctagtaatggtagggcttgctacaaagaaagttggagctgagcctgggcactagcccaggct 35300601  T
Q  131 agctggagtttggctccgcccctgc 155  Q
    |||||| |  |||||||||||||||    
T  35300602 agctggggggtggctccgcccctgc 35300626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 70 - 154
Target Start/End: Original strand, 25688291 - 25688375
Alignment:
Q  70 tagtaatggctgaagttgctacaaagaaagtaggagctgagtatgggctagtgcccaggctagctggagtttggctccgcccctg 154  Q
    |||||||||||||  |||||||||||||| | |||||||||| ||||||||| ||||| ||| ||||    ||||||||||||||    
T  25688291 tagtaatggctgagcttgctacaaagaaaattggagctgagtctgggctagtacccagactaactgggtggtggctccgcccctg 25688375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 36
Target Start/End: Complemental strand, 4843413 - 4843379
Alignment:
Q  2 tacctcacctgagaacctaaatccttggcaaaatc 36  Q
    ||||||||||| |||||||||||||||||||||||    
T  4843413 tacctcacctgggaacctaaatccttggcaaaatc 4843379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 131
Target Start/End: Original strand, 21932894 - 21932940
Alignment:
Q  85 ttgctacaaagaaagtaggagctgagtatgggctagtgcccaggcta 131  Q
    |||||||||||||||| |||| ||||  |||||||||||||||||||    
T  21932894 ttgctacaaagaaagttggagttgagcctgggctagtgcccaggcta 21932940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 63; Significance: 2e-27; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 8 - 134
Target Start/End: Complemental strand, 13695126 - 13695000
Alignment:
Q  8 acctgagaacctaaatccttggcaaaatccgaaagtaaatccgcagaaaaagcaagagattctagtaatggctgaagttgctacaaagaaagtaggagct 107  Q
    ||||| ||||||||||||||||||||||| | | |||||||| ||| |||||| |||  |||||||||||| |||| |||||||||||||||| | ||||    
T  13695126 acctgggaacctaaatccttggcaaaatctgcaggtaaatccacaggaaaagcgagaagttctagtaatggatgaacttgctacaaagaaagttgaagct 13695027  T
Q  108 gagtatgggctagtgcccaggctagct 134  Q
    |||  || |||||||||||||||||||    
T  13695026 gagcctgagctagtgcccaggctagct 13695000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 44 - 155
Target Start/End: Original strand, 39605902 - 39606012
Alignment:
Q  44 aaatccgcagaaaaagcaagagattctagtaatggctgaagttgctacaaagaaagtaggagctgagtatgggctagtgcccaggctagctggagtttgg 143  Q
    ||||| |||||||||||||||| ||||| |||||| || | ||| |||||||||||||| |||||||| ||||||||||| |||||||||||| |  |||    
T  39605902 aaatctgcagaaaaagcaagaggttctaataatggatggacttgttacaaagaaagtagaagctgagtctgggctagtgctcaggctagctgg-gggtgg 39606000  T
Q  144 ctccgcccctgc 155  Q
    ||||||||||||    
T  39606001 ctccgcccctgc 39606012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 8 - 154
Target Start/End: Complemental strand, 13694911 - 13694766
Alignment:
Q  8 acctgagaacctaaatccttggcaaaatccgaaagtaaatccgcagaaaaagcaagagattctagtaatggctgaagttgctacaaagaaagtaggagct 107  Q
    ||||| |||| |||||||||||||||||||| |  ||||||| ||| |||||| |||  |||||||||||| ||   |||||||||||||||| | || |    
T  13694911 acctgggaacttaaatccttggcaaaatccgcagataaatccacaggaaaagcgagaagttctagtaatggatgggcttgctacaaagaaagttgaagtt 13694812  T
Q  108 gagtatgggctagtgcccaggctagctggagtttggctccgcccctg 154  Q
    |||  |||||||||||||||||||||||| |  ||||||||||||||    
T  13694811 gagcctgggctagtgcccaggctagctgg-gggtggctccgcccctg 13694766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 42 - 155
Target Start/End: Complemental strand, 16567833 - 16567720
Alignment:
Q  42 gtaaatccgcagaaaaagcaagagattctagtaatggctgaagttgctacaaagaaagtaggagctgagtatgggctagtgcccaggctagctggagttt 141  Q
    |||||||||||  |||||| | |  ||||||||||||||| | |||||||||||||| | |||||||||  |||||||||||||||||||||||| |  |    
T  16567833 gtaaatccgcaagaaaagctaaaagttctagtaatggctggacttgctacaaagaaaattggagctgagcctgggctagtgcccaggctagctggggggt 16567734  T
Q  142 ggctccgcccctgc 155  Q
    ||||||||||||||    
T  16567733 ggctccgcccctgc 16567720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 31 - 128
Target Start/End: Original strand, 16667556 - 16667653
Alignment:
Q  31 aaaatccgaaagtaaatccgcagaaaaagcaagagattctagtaatggctgaagttgctacaaagaaagtaggagctgagtatgggctagtgcccagg 128  Q
    |||||||| | |||||||||||| |||||| | |  ||||||||||||||| | |||||||||||||||| |||||||||| ||||||||||||||||    
T  16667556 aaaatccgcaggtaaatccgcaggaaaagctaaaagttctagtaatggctggacttgctacaaagaaagttggagctgagtctgggctagtgcccagg 16667653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 42 - 154
Target Start/End: Complemental strand, 37779706 - 37779595
Alignment:
Q  42 gtaaatccgcagaaaaagcaagagattctagtaatggctgaagttgctacaaagaaagtaggagctgagtatgggctagtgcccaggctagctggagttt 141  Q
    ||||||||||||||||| | | |  ||||||||||||||||| |||||||||||||| | |||| ||||  ||| |||||||||||||||||||| |  |    
T  37779706 gtaaatccgcagaaaaaactaaaagttctagtaatggctgaacttgctacaaagaaaattggagttgagcctggactagtgcccaggctagctgg-gggt 37779608  T
Q  142 ggctccgcccctg 154  Q
    |||||||||||||    
T  37779607 ggctccgcccctg 37779595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 42 - 151
Target Start/End: Original strand, 32953741 - 32953850
Alignment:
Q  42 gtaaatccgcagaaaaagcaagagattctagtaatggctgaagttgctacaaagaaagtaggagctgagtatgggctagtgcccaggctagctggagttt 141  Q
    ||||||||| || |||||| | |  |||||||||||||||   |||||||||||||| | |||||||||  | |||||||||||||||||||||| |  |    
T  32953741 gtaaatccgtaggaaaagctaaaagttctagtaatggctgggcttgctacaaagaaaattggagctgagcctcggctagtgcccaggctagctggggggt 32953840  T
Q  142 ggctccgccc 151  Q
    ||||||||||    
T  32953841 ggctccgccc 32953850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 42 - 154
Target Start/End: Complemental strand, 21069039 - 21068927
Alignment:
Q  42 gtaaatccgcagaaaaagcaagagattctagtaatggctgaagttgctacaaagaaagtaggagctgagtatgggctagtgcccaggctagctggagttt 141  Q
    |||||||||||| ||| || | | ||||||||||||| ||   || |||||||||||||  ||| ||||  || ||||||||||||||||||||| || |    
T  21069039 gtaaatccgcaggaaaggctaaaaattctagtaatggttgggcttactacaaagaaagttagagttgagcctgagctagtgcccaggctagctggggtgt 21068940  T
Q  142 ggctccgcccctg 154  Q
    |||||||||||||    
T  21068939 ggctccgcccctg 21068927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 44 - 154
Target Start/End: Complemental strand, 42989574 - 42989463
Alignment:
Q  44 aaatccgcagaaaaagcaagagattctagtaatggctgaagttgctacaaagaaagtaggagctgagtatgggctagtg-cccaggctagctggagtttg 142  Q
    |||| |||||||||||| |||  |||||||||||||||   ||||  |||||||||||| ||||||   |||||||||| |||||||||||||| |  ||    
T  42989574 aaattcgcagaaaaagcgagaagttctagtaatggctgggcttgcctcaaagaaagtagaagctgatcctgggctagtgccccaggctagctggggggtg 42989475  T
Q  143 gctccgcccctg 154  Q
    ||||||||||||    
T  42989474 gctccgcccctg 42989463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 72 - 154
Target Start/End: Complemental strand, 37607467 - 37607386
Alignment:
Q  72 gtaatggctgaagttgctacaaagaaagtaggagctgagtatgggctagtgcccaggctagctggagtttggctccgcccctg 154  Q
    |||||||||||| |||||||||||||| | |||| ||||  ||| |||||||||||||||||||| |  ||||||||||||||    
T  37607467 gtaatggctgaacttgctacaaagaaaattggagttgagcctggactagtgcccaggctagctgg-gggtggctccgcccctg 37607386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 42 - 155
Target Start/End: Original strand, 43228716 - 43228828
Alignment:
Q  42 gtaaatccgcagaaaaagcaagagattctagtaatggctgaagttgctacaaagaaagtaggagctgagtatgggctagtgcccaggctagctggagttt 141  Q
    ||||||||| || |||||| | |  |||||||||||||||   |||||||||||||| | |||| ||||  | |||||||||||||||||||||| |  |    
T  43228716 gtaaatccgtaggaaaagctaaaagttctagtaatggctgggcttgctacaaagaaaattggagttgagccttggctagtgcccaggctagctgg-gggt 43228814  T
Q  142 ggctccgcccctgc 155  Q
    ||||||||||||||    
T  43228815 ggctccgcccctgc 43228828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 67 - 154
Target Start/End: Original strand, 1672585 - 1672671
Alignment:
Q  67 ttctagtaatggctgaagttgctacaaagaaagtaggagctgagtatgggctagtgcccaggctagctggagtttggctccgcccctg 154  Q
    |||||||||||| ||   |||||||||||||| | |||||||||  || ||||||||||||||||||||| |  ||||||||||||||    
T  1672585 ttctagtaatggttgggattgctacaaagaaaattggagctgagcctgagctagtgcccaggctagctgg-gggtggctccgcccctg 1672671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 67 - 154
Target Start/End: Original strand, 13942881 - 13942968
Alignment:
Q  67 ttctagtaatggctgaagttgctacaaagaaagtaggagctgagtatgggctagtgcccaggctagctggagtttggctccgcccctg 154  Q
    ||||||||| |||||   |||||||||||||||| ||| |||||  |||||||||||||||||||| |||    ||||||||||||||    
T  13942881 ttctagtaaaggctgggtttgctacaaagaaagttggacctgagcctgggctagtgcccaggctagttgggaggtggctccgcccctg 13942968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 44 - 154
Target Start/End: Complemental strand, 30249005 - 30248895
Alignment:
Q  44 aaatccgcagaaaaagcaagagattctagtaatggctgaagttgctacaaagaaagtaggagctgagtatgggctagtgcccaggctagctggagtttgg 143  Q
    ||||||||||||||||| | | ||||||||||| | ||   |||||||||||||||| ||||| |||  |||||    ||||||||||||||| |  |||    
T  30249005 aaatccgcagaaaaagctaaaaattctagtaatagttgggcttgctacaaagaaagttggagccgagcctgggcactagcccaggctagctggggggtgg 30248906  T
Q  144 ctccgcccctg 154  Q
    |||||||||||    
T  30248905 ctccgcccctg 30248895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 44 - 154
Target Start/End: Complemental strand, 34444006 - 34443896
Alignment:
Q  44 aaatccgcagaaaaagcaagagattctagtaatggctgaagttgctacaaagaaagtaggagctgagtatgggctagtgcccaggctagctggagtttgg 143  Q
    |||||||||| |||||| | | |||||||||||||  |   |||||||||||||||| |||||||||  |||||    ||||||||||||||| |  |||    
T  34444006 aaatccgcaggaaaagctacaaattctagtaatggtagggcttgctacaaagaaagttggagctgagcctgggcactagcccaggctagctggggggtgg 34443907  T
Q  144 ctccgcccctg 154  Q
    |||||||||||    
T  34443906 ctccgcccctg 34443896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 31 - 157
Target Start/End: Complemental strand, 34846408 - 34846282
Alignment:
Q  31 aaaatccgaaagtaaatccgcagaaaaagcaagagattctagtaatggctgaagttgctacaaagaaagtaggagctgagtatgggctagtgcccaggct 130  Q
    |||||||| | |||||||||||| | |||| | | ||||||||||||| |  | |||||||||||||||| ||||| |||  |||||    |||||||||    
T  34846408 aaaatccggaggtaaatccgcaggataagctaaaaattctagtaatggtttgacttgctacaaagaaagttggagccgagcctgggcactagcccaggct 34846309  T
Q  131 agctggagtttggctccgcccctgctg 157  Q
    |||||| |  |||||||||| ||||||    
T  34846308 agctggggggtggctccgcctctgctg 34846282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 42 - 127
Target Start/End: Original strand, 7162157 - 7162242
Alignment:
Q  42 gtaaatccgcagaaaaagcaagagattctagtaatggctgaagttgctacaaagaaagtaggagctgagtatgggctagtgcccag 127  Q
    |||||||||||| |||||| | |  || ||||||||||||   |||||||||||||| | |||||||||  |||||||||||||||    
T  7162157 gtaaatccgcaggaaaagctaaaatttttagtaatggctgggcttgctacaaagaaaattggagctgagcctgggctagtgcccag 7162242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 67 - 136
Target Start/End: Original strand, 36234669 - 36234738
Alignment:
Q  67 ttctagtaatggctgaagttgctacaaagaaagtaggagctgagtatgggctagtgcccaggctagctgg 136  Q
    ||||| |||||||||   |||||||||||||| | |||||||||| |||||||||| |||||||| ||||    
T  36234669 ttctaataatggctgggcttgctacaaagaaaattggagctgagtctgggctagtgtccaggctaactgg 36234738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 110
Target Start/End: Original strand, 17192743 - 17192811
Alignment:
Q  42 gtaaatccgcagaaaaagcaagagattctagtaatggctgaagttgctacaaagaaagtaggagctgag 110  Q
    |||||||||||| || ||| | |  ||||||||||||||||  |||||||||||||||| |||||||||    
T  17192743 gtaaatccgcaggaagagctaaaagttctagtaatggctgagcttgctacaaagaaagttggagctgag 17192811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 102
Target Start/End: Original strand, 7159676 - 7159723
Alignment:
Q  55 aaaagcaagagattctagtaatggctgaagttgctacaaagaaagtag 102  Q
    |||||| |||| ||||||||||||||||  ||||||||||||||||||    
T  7159676 aaaagcgagaggttctagtaatggctgagcttgctacaaagaaagtag 7159723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 67 - 138
Target Start/End: Original strand, 8214711 - 8214782
Alignment:
Q  67 ttctagtaatggctgaagttgctacaaagaaagtaggagctgagtatgggctagtgcccaggctagctggag 138  Q
    ||||||||||||||  | ||| |||||| ||||| |||||| ||| ||| ||||||| ||||||||||||||    
T  8214711 ttctagtaatggctagacttgttacaaaaaaagttggagctaagtctggactagtgctcaggctagctggag 8214782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 136
Target Start/End: Complemental strand, 9738414 - 9738320
Alignment:
Q  42 gtaaatccgcagaaaaagcaagagattctagtaatggctgaagttgctacaaagaaagtaggagctgagtatgggctagtgcccaggctagctgg 136  Q
    |||||||||||| ||| || |||  |||||||||||| ||   ||||| |||||||||||| ||||||||  |||||||||| ||  ||||||||    
T  9738414 gtaaatccgcaggaaatgcgagaagttctagtaatggttgggcttgcttcaaagaaagtagaagctgagtcagggctagtgcacaaactagctgg 9738320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 101 - 154
Target Start/End: Complemental strand, 767283 - 767231
Alignment:
Q  101 aggagctgagtatgggctagtgcccaggctagctggagtttggctccgcccctg 154  Q
    ||||||||||  |||||||||||||||||||||||| |  ||||||||||||||    
T  767283 aggagctgagcctgggctagtgcccaggctagctgg-gggtggctccgcccctg 767231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 44 - 153
Target Start/End: Complemental strand, 2476444 - 2476335
Alignment:
Q  44 aaatccgcagaaaaagcaagagattctagtaatggctgaagttgctacaaagaaagtaggagctgagtatgggctagtgcccaggctagctggagtttgg 143  Q
    |||||||||| |||||| | | |||||||||||||  | | |||||||||||||| | |||||||||  |||||    ||||||||||||||| |   ||    
T  2476444 aaatccgcaggaaaagctaaaaattctagtaatggtaggacttgctacaaagaaaattggagctgagcctgggcactagcccaggctagctggggggagg 2476345  T
Q  144 ctccgcccct 153  Q
    ||||||||||    
T  2476344 ctccgcccct 2476335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 156
Target Start/End: Complemental strand, 15503956 - 15503845
Alignment:
Q  44 aaatccgcagaaaaagcaagagattctagtaatggctgaagttgctacaaagaaagtaggagctgagtatgggctagtgcccaggctagctggagtttgg 143  Q
    |||||||||| |||||| | | ||||||||||||| |    |||||||||||||| | | || ||||  ||||||||||||||| |||||| | |  |||    
T  15503956 aaatccgcaggaaaagctaaaaattctagtaatggttaggcttgctacaaagaaatttgaaggtgagcctgggctagtgcccagactagcttg-gggtgg 15503858  T
Q  144 ctccgcccctgct 156  Q
    |||||||||||||    
T  15503857 ctccgcccctgct 15503845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 6e-24; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 42 - 154
Target Start/End: Complemental strand, 8968372 - 8968260
Alignment:
Q  42 gtaaatccgcagaaaaagcaagagattctagtaatggctgaagttgctacaaagaaagtaggagctgagtatgggctagtgcccaggctagctggagttt 141  Q
    ||||||||||||||||||  | || ||||||||||||||| | ||||||||||| |||||| |||||||| |||||||||||| ||||||||||| |  |    
T  8968372 gtaaatccgcagaaaaagtgataggttctagtaatggctggacttgctacaaaggaagtagaagctgagtctgggctagtgcctaggctagctggggggt 8968273  T
Q  142 ggctccgcccctg 154  Q
    ||||||| |||||    
T  8968272 ggctccgtccctg 8968260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 67 - 153
Target Start/End: Original strand, 34282995 - 34283081
Alignment:
Q  67 ttctagtaatggctgaagttgctacaaagaaagtaggagctgagtatgggctagtgcccaggctagctggagtttggctccgcccct 153  Q
    ||||||||||| ||| | |||||||||||||||| |||||||||  |||||||||||||||||||||||| |  |||||||||||||    
T  34282995 ttctagtaatgactggacttgctacaaagaaagttggagctgagcctgggctagtgcccaggctagctggggggtggctccgcccct 34283081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 8 - 136
Target Start/End: Complemental strand, 12478211 - 12478083
Alignment:
Q  8 acctgagaacctaaatccttggcaaaatccgaaagtaaatccgcagaaaaagcaagagattctagtaatggctgaagttgctacaaagaaagtaggagct 107  Q
    ||||| ||||| |||||||||||||||| || | ||||| |||||| |||||  |||| |||||| ||| | || | |||||||||||||||||| || |    
T  12478211 acctgggaaccaaaatccttggcaaaattcgcaggtaaacccgcaggaaaagagagaggttctagcaatagatggacttgctacaaagaaagtagaagtt 12478112  T
Q  108 gagtatgggctagtgcccaggctagctgg 136  Q
    ||   ||||||||||||||||||||||||    
T  12478111 gatcctgggctagtgcccaggctagctgg 12478083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 44 - 154
Target Start/End: Complemental strand, 38214799 - 38214689
Alignment:
Q  44 aaatccgcagaaaaagcaagagattctagtaatggctgaagttgctacaaagaaagtaggagctgagtatgggctagtgcccaggctagctggagtttgg 143  Q
    |||||||||| |||||| | |  |||||||| |||||| | |||||||||||||| | |||||||||   ||||||||||||||||||||||| |  |||    
T  38214799 aaatccgcaggaaaagctaaaagttctagtattggctggacttgctacaaagaaaattggagctgagcccgggctagtgcccaggctagctggggggtgg 38214700  T
Q  144 ctccgcccctg 154  Q
    |||||||||||    
T  38214699 ctccgcccctg 38214689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 44 - 154
Target Start/End: Original strand, 21138133 - 21138243
Alignment:
Q  44 aaatccgcagaaaaagcaagagattctagtaatggctgaagttgctacaaagaaagtaggagctgagtatgggctagtgcccaggctagctggagtttgg 143  Q
    |||||||||| ||||||||||| |||||||||||| |    |||||||||||||||||| |||||||  ||| ||| |||| | ||||||||| |  |||    
T  21138133 aaatccgcaggaaaagcaagaggttctagtaatggttaggcttgctacaaagaaagtagaagctgagcctggactaatgcctatgctagctggggggtgg 21138232  T
Q  144 ctccgcccctg 154  Q
    |||||||||||    
T  21138233 ctccgcccctg 21138243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 70 - 156
Target Start/End: Original strand, 27321951 - 27322036
Alignment:
Q  70 tagtaatggctgaagttgctacaaagaaagtaggagctgagtatgggctagtgcccaggctagctggagtttggctccgcccctgct 156  Q
    ||||||||||||   |||||||||||||| | |||||||||  ||||| |||||||||||||||||| |  ||||||||||||||||    
T  27321951 tagtaatggctgggcttgctacaaagaaaattggagctgagcctgggcaagtgcccaggctagctgg-gggtggctccgcccctgct 27322036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 85 - 154
Target Start/End: Original strand, 39431790 - 39431859
Alignment:
Q  85 ttgctacaaagaaagtaggagctgagtatgggctagtgcccaggctagctggagtttggctccgcccctg 154  Q
    |||||||||||||||| |||||||||   ||||||||||||||||||||||| |  |||||| |||||||    
T  39431790 ttgctacaaagaaagttggagctgagcccgggctagtgcccaggctagctggggggtggctctgcccctg 39431859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 31 - 155
Target Start/End: Original strand, 3384093 - 3384216
Alignment:
Q  31 aaaatccgaaagtaaatccgcagaaaaagcaagagattctagtaatggctgaagttgctacaaagaaagtaggagctgagtatgggctagtgcccaggct 130  Q
    |||||||| | ||||||||||||||||||| | | |||||| ||||||  | | |||||||||||||||| |||||||||  |||||     ||||||||    
T  3384093 aaaatccgcaggtaaatccgcagaaaaagctaaaaattctaataatggtaggacttgctacaaagaaagttggagctgagcctgggcactaacccaggct 3384192  T
Q  131 agctggagtttggctccgcccctgc 155  Q
    ||||||||  |||||||||| ||||    
T  3384193 agctggag-gtggctccgcctctgc 3384216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 67 - 155
Target Start/End: Complemental strand, 43843193 - 43843106
Alignment:
Q  67 ttctagtaatggctgaagttgctacaaagaaagtaggagctgagtatgggctagtgcccaggctagctggagtttggctccgcccctgc 155  Q
    ||||||||||||||||  |||||||||||||||||| || ||||   ||||||||| ||||||||| |||||  ||||||| |||||||    
T  43843193 ttctagtaatggctgaccttgctacaaagaaagtagaagttgagcccgggctagtg-ccaggctagatggagggtggctccacccctgc 43843106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 32 - 110
Target Start/End: Original strand, 31500904 - 31500981
Alignment:
Q  32 aaatccgaaagtaaatccgcagaaaaagcaagagattctagtaatggctgaagttgctacaaagaaagtaggagctgag 110  Q
    ||||||| |||||||||| |||||||||| | | ||| |||||||||| || | ||||||||||||||| |||||||||    
T  31500904 aaatccgcaagtaaatcctcagaaaaagctaaaaattttagtaatggcgga-gctgctacaaagaaagttggagctgag 31500981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 36
Target Start/End: Complemental strand, 13243203 - 13243169
Alignment:
Q  2 tacctcacctgagaacctaaatccttggcaaaatc 36  Q
    ||||||||||| |||||||||||||||||||||||    
T  13243203 tacctcacctgggaacctaaatccttggcaaaatc 13243169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 136
Target Start/End: Complemental strand, 376427 - 376383
Alignment:
Q  92 aaagaaagtaggagctgagtatgggctagtgcccaggctagctgg 136  Q
    ||||||||||| |||||||   |||||||||||||||||||||||    
T  376427 aaagaaagtagcagctgagcccgggctagtgcccaggctagctgg 376383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 136
Target Start/End: Complemental strand, 24965073 - 24964981
Alignment:
Q  44 aaatccgcagaaaaagcaagagattctagtaatggctgaagttgctacaaagaaagtaggagctgagtatgggctagtgcccaggctagctgg 136  Q
    |||||||||| |||||| | | ||||||||||||| ||   |||||||||||||||| ||||| |||  |||||    |||||||||||||||    
T  24965073 aaatccgcaggaaaagctaaaaattctagtaatggttgggcttgctacaaagaaagttggagccgagcctgggcactagcccaggctagctgg 24964981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 6e-24; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 67 - 155
Target Start/End: Complemental strand, 49898432 - 49898344
Alignment:
Q  67 ttctagtaatggctgaagttgctacaaagaaagtaggagctgagtatgggctagtgcccaggctagctggagtttggctccgcccctgc 155  Q
    ||||||||||||||||| ||| |||||||||||| |||||||||  |||||||||||||||||||||||| |  |||||||||||||||    
T  49898432 ttctagtaatggctgaacttgttacaaagaaagttggagctgagcctgggctagtgcccaggctagctggggggtggctccgcccctgc 49898344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 44 - 136
Target Start/End: Original strand, 6802175 - 6802267
Alignment:
Q  44 aaatccgcagaaaaagcaagagattctagtaatggctgaagttgctacaaagaaagtaggagctgagtatgggctagtgcccaggctagctgg 136  Q
    |||||||||| |||||| |||  ||||||||||||||||  |||||||||||||||||| || ||||  ||||||||||||||||||||||||    
T  6802175 aaatccgcaggaaaagcgagaagttctagtaatggctgagcttgctacaaagaaagtagaagttgagcctgggctagtgcccaggctagctgg 6802267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 46 - 154
Target Start/End: Complemental strand, 4774045 - 4773937
Alignment:
Q  46 atccgcagaaaaagcaagagattctagtaatggctgaagttgctacaaagaaagtaggagctgagtatgggctagtgcccaggctagctggagtttggct 145  Q
    |||||||| |||||| | |  |||||||||||||||   |||||||||| ||| | |||| ||||| |||||||||||||||||||||||| |  |||||    
T  4774045 atccgcaggaaaagctaaaagttctagtaatggctgggcttgctacaaaaaaaattggagttgagtctgggctagtgcccaggctagctggggggtggct 4773946  T
Q  146 ccgcccctg 154  Q
    |||||||||    
T  4773945 ccgcccctg 4773937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 44 - 124
Target Start/End: Original strand, 4642145 - 4642225
Alignment:
Q  44 aaatccgcagaaaaagcaagagattctagtaatggctgaagttgctacaaagaaagtaggagctgagtatgggctagtgcc 124  Q
    |||||||||| |||||| | |  ||||||||||||||||| |||||||||||||||| |||||||||  ||| ||||||||    
T  4642145 aaatccgcaggaaaagctaaaagttctagtaatggctgaacttgctacaaagaaagtcggagctgagcctggactagtgcc 4642225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 42 - 154
Target Start/End: Complemental strand, 14727360 - 14727248
Alignment:
Q  42 gtaaatccgcagaaaaagcaagagattctagtaatggctgaagttgctacaaagaaagtaggagctgagtatgggctagtgcccaggctagctggagttt 141  Q
    |||||||||||| |||||| | | ||||||||||||| || | |||||||||||||||| |||||||||  |||||    ||||||||||||| | |  |    
T  14727360 gtaaatccgcaggaaaagctaaaaattctagtaatggttggacttgctacaaagaaagttggagctgagcctgggcactagcccaggctagcttgggggt 14727261  T
Q  142 ggctccgcccctg 154  Q
    |||||||||||||    
T  14727260 ggctccgcccctg 14727248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 44 - 154
Target Start/End: Complemental strand, 11647180 - 11647071
Alignment:
Q  44 aaatccgcagaaaaagcaagagattctagtaatggctgaagttgctacaaagaaagtaggagctgagtatgggctagtgcccaggctagctggagtttgg 143  Q
    |||||||||| |||||| |||| |||| |||||||||    |||||||||||||||||| || ||||| | || |||||| |||||||||||| |  |||    
T  11647180 aaatccgcaggaaaagcgagaggttcttgtaatggcttggcttgctacaaagaaagtagaagttgagtctcggatagtgctcaggctagctgg-gggtgg 11647082  T
Q  144 ctccgcccctg 154  Q
    |||||||||||    
T  11647081 ctccgcccctg 11647071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 67 - 153
Target Start/End: Original strand, 44238957 - 44239042
Alignment:
Q  67 ttctagtaatggctgaagttgctacaaagaaagtaggagctgagtatgggctagtgcccaggctagctggagtttggctccgcccct 153  Q
    |||||||||||||||   || ||||||||||||| |||||||||  ||||||||||||||| |||||||| |  |||||||||||||    
T  44238957 ttctagtaatggctgggctttctacaaagaaagttggagctgagcctgggctagtgcccagactagctgg-gggtggctccgcccct 44239042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 67 - 154
Target Start/End: Complemental strand, 24646070 - 24645984
Alignment:
Q  67 ttctagtaatggctgaagttgctacaaagaaagtaggagctgagtatgggctagtgcccaggctagctggagtttggctccgcccctg 154  Q
    |||||||||||| ||| ||||||||||||||||| |||| ||||  || ||||||| ||| ||||||||| |  ||||||||||||||    
T  24646070 ttctagtaatggttga-gttgctacaaagaaagttggagttgagcctgagctagtgtccatgctagctggggggtggctccgcccctg 24645984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 85 - 136
Target Start/End: Complemental strand, 41751970 - 41751919
Alignment:
Q  85 ttgctacaaagaaagtaggagctgagtatgggctagtgcccaggctagctgg 136  Q
    |||||||||||||||||| || || || ||||||||||||||||||||||||    
T  41751970 ttgctacaaagaaagtagaagttgcgtctgggctagtgcccaggctagctgg 41751919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 44 - 154
Target Start/End: Complemental strand, 25007504 - 25007394
Alignment:
Q  44 aaatccgcagaaaaagcaagagattctagtaatggctgaagttgctacaaagaaagtaggagctgagtatgggctagtgcccaggctagctggagtttgg 143  Q
    |||||||||| |||||| | | |||||||||||||  |   |||||||||||||||| |||||||||  |||||    ||||||||||||||| |  |||    
T  25007504 aaatccgcaggaaaagctaaaaattctagtaatggtagggcttgctacaaagaaagttggagctgagcctgggcattagcccaggctagctggggggtgg 25007405  T
Q  144 ctccgcccctg 154  Q
    |||||||||||    
T  25007404 ctccgcccctg 25007394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 44 - 154
Target Start/End: Original strand, 37154065 - 37154175
Alignment:
Q  44 aaatccgcagaaaaagcaagagattctagtaatggctgaagttgctacaaagaaagtaggagctgagtatgggctagtgcccaggctagctggagtttgg 143  Q
    |||||||||| |||||| | | |||||||||||||  ||  || ||||||||||||| |||||||||  |||||    ||||||||||||||| |  |||    
T  37154065 aaatccgcaggaaaagctaaaaattctagtaatggtagagcttcctacaaagaaagttggagctgagcctgggcactagcccaggctagctggggggtgg 37154164  T
Q  144 ctccgcccctg 154  Q
    |||||||||||    
T  37154165 ctccgcccctg 37154175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 44 - 154
Target Start/End: Complemental strand, 37574973 - 37574864
Alignment:
Q  44 aaatccgcagaaaaagcaagagattctagtaatggctgaagttgctacaaagaaagtaggagctgagtatgggctagtgcccaggctagctggagtttgg 143  Q
    |||||| |||||||| | |||| ||||||||||||||  | |||||| ||||||||||| || ||||| ||| |||||| |||| |||| ||| |  |||    
T  37574973 aaatccacagaaaaaacgagaggttctagtaatggctatacttgctataaagaaagtagaagttgagtctggactagtgtccagactaggtgg-gggtgg 37574875  T
Q  144 ctccgcccctg 154  Q
    |||||||||||    
T  37574874 ctccgcccctg 37574864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 38
Target Start/End: Original strand, 6802102 - 6802138
Alignment:
Q  2 tacctcacctgagaacctaaatccttggcaaaatccg 38  Q
    ||||||||||| |||||||||||||||||||||||||    
T  6802102 tacctcacctgggaacctaaatccttggcaaaatccg 6802138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 156
Target Start/End: Original strand, 27584088 - 27584200
Alignment:
Q  44 aaatccgcagaaaaagcaagagattctagtaatggctgaagttgctacaaagaaagtaggagctgagtatgggctagtgcccaggctagctggagtttgg 143  Q
    |||||||||| |||||| | | ||||||||||||| |    |||||||||||||||| ||||| |||  |||||    ||||||||||||||| |  |||    
T  27584088 aaatccgcaggaaaagctaaaaattctagtaatggtttggcttgctacaaagaaagttggagccgagcctgggcgctagcccaggctagctggggggtgg 27584187  T
Q  144 ctccgcccctgct 156  Q
    |||||||||||||    
T  27584188 ctccgcccctgct 27584200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 89 - 141
Target Start/End: Complemental strand, 28463121 - 28463069
Alignment:
Q  89 tacaaagaaagtaggagctgagtatgggctagtgcccaggctagctggagttt 141  Q
    |||||||||||||| ||||||||  | ||||||||||||||||||||| ||||    
T  28463121 tacaaagaaagtagcagctgagtccgagctagtgcccaggctagctggggttt 28463069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 110
Target Start/End: Original strand, 33469014 - 33469082
Alignment:
Q  42 gtaaatccgcagaaaaagcaagagattctagtaatggctgaagttgctacaaagaaagtaggagctgag 110  Q
    |||||||||||| |||||| | |  |||||||||||| |||| |||||| ||||||||| |||||||||    
T  33469014 gtaaatccgcaggaaaagctaaaatttctagtaatggttgaatttgctataaagaaagttggagctgag 33469082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 47 - 126
Target Start/End: Original strand, 26686504 - 26686583
Alignment:
Q  47 tccgcagaaaaagcaagagattctagtaatggctgaagttgctacaaagaaagtaggagctgagtatgggctagtgccca 126  Q
    ||||||| |||| | |||||||||||||||| | |   |||||||||| ||||||| |||||||| ||| ||||||||||    
T  26686504 tccgcaggaaaaacgagagattctagtaatgaccgggtttgctacaaaaaaagtagaagctgagtctggactagtgccca 26686583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 36
Target Start/End: Complemental strand, 9527154 - 9527120
Alignment:
Q  2 tacctcacctgagaacctaaatccttggcaaaatc 36  Q
    ||||||||||| |||||||||||||||||||||||    
T  9527154 tacctcacctgggaacctaaatccttggcaaaatc 9527120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 36
Target Start/End: Complemental strand, 24646162 - 24646128
Alignment:
Q  2 tacctcacctgagaacctaaatccttggcaaaatc 36  Q
    ||||||||||| |||||||||||||||||||||||    
T  24646162 tacctcacctgggaacctaaatccttggcaaaatc 24646128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 110
Target Start/End: Original strand, 25011611 - 25011677
Alignment:
Q  44 aaatccgcagaaaaagcaagagattctagtaatggctgaagttgctacaaagaaagtaggagctgag 110  Q
    |||||||||| |||||| | | ||||||||||||| ||   |||||||||||||||| |||||||||    
T  25011611 aaatccgcaggaaaagctaaaaattctagtaatggttgggcttgctacaaagaaagttggagctgag 25011677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 36
Target Start/End: Complemental strand, 34459218 - 34459184
Alignment:
Q  2 tacctcacctgagaacctaaatccttggcaaaatc 36  Q
    |||||||||||||||| ||||||||||||||||||    
T  34459218 tacctcacctgagaacttaaatccttggcaaaatc 34459184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 85 - 154
Target Start/End: Complemental strand, 4163441 - 4163372
Alignment:
Q  85 ttgctacaaagaaagtaggagctgagtatgggctagtgcccaggctagctggagtttggctccgcccctg 154  Q
    |||||| ||||||||| |||||| |   |||||||||||||||||||||||| |  |||||||| |||||    
T  4163441 ttgctataaagaaagttggagctaaacctgggctagtgcccaggctagctggggggtggctccgtccctg 4163372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 154
Target Start/End: Complemental strand, 6331727 - 6331606
Alignment:
Q  31 aaaatccgaaagtaaatccgcagaaaaagcaagagattctagtaatggctgaagttgctacaaagaaagtaggagctgagtatgggctagtgcccaggct 130  Q
    |||||||| | ||||| |||||| |||||| | |  |||||||||||| |||  |||||||| ||||||| ||||| |||  |||||    |||||||||    
T  6331727 aaaatccggaggtaaacccgcaggaaaagctaaaatttctagtaatggttgagtttgctacatagaaagttggagccgagcctgggcactagcccaggct 6331628  T
Q  131 agctggagtttggctccgcccctg 154  Q
    |||||| |  ||||||||||||||    
T  6331627 agctgggg--tggctccgcccctg 6331606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 108
Target Start/End: Complemental strand, 9527085 - 9527021
Alignment:
Q  44 aaatccgcagaaaaagcaagagattctagtaatggctgaagttgctacaaagaaagtaggagctg 108  Q
    |||||||||| |||||| | |  |||||||||||||||   |||||||||||||||| |||||||    
T  9527085 aaatccgcaggaaaagctaaaagttctagtaatggctgggcttgctacaaagaaagttggagctg 9527021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 124
Target Start/End: Original strand, 16640361 - 16640441
Alignment:
Q  44 aaatccgcagaaaaagcaagagattctagtaatggctgaagttgctacaaagaaagtaggagctgagtatgggctagtgcc 124  Q
    |||| ||||| |||||| ||||||||| ||||||| ||   |||||||||||||||||| | |||||| | ||||| ||||    
T  16640361 aaattcgcaggaaaagcgagagattcttgtaatggttggtcttgctacaaagaaagtagaaactgagtctaggctaatgcc 16640441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 1e-21; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 42 - 154
Target Start/End: Complemental strand, 34756722 - 34756610
Alignment:
Q  42 gtaaatccgcagaaaaagcaagagattctagtaatggctgaagttgctacaaagaaagtaggagctgagtatgggctagtgcccaggctagctggagttt 141  Q
    |||||||||||| |||||  |||| ||||||||| ||| | | |||||||||||||||||| |||||||  |||||||||||||||||||||||| |  |    
T  34756722 gtaaatccgcaggaaaagtgagaggttctagtaacggccggacttgctacaaagaaagtagaagctgagcctgggctagtgcccaggctagctggggggt 34756623  T
Q  142 ggctccgcccctg 154  Q
    ||||||| |||||    
T  34756622 ggctccgtccctg 34756610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 67 - 154
Target Start/End: Original strand, 304220 - 304307
Alignment:
Q  67 ttctagtaatggctgaagttgctacaaagaaagtaggagctgagtatgggctagtgcccaggctagctggagtttggctccgcccctg 154  Q
    ||||||||||||||||  |||||||||||||||| |||||||||  |||||||||||||| ||||||||| |  |||| |||||||||    
T  304220 ttctagtaatggctgagcttgctacaaagaaagttggagctgagcttgggctagtgcccaagctagctggggggtggcaccgcccctg 304307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 66 - 155
Target Start/End: Original strand, 33909438 - 33909526
Alignment:
Q  66 attctagtaatggctgaagttgctacaaagaaagtaggagctgagtatgggctagtgcccaggctagctggagtttggctccgcccctgc 155  Q
    |||||||||||| ||||  |||||||||||||||| |||||| ||| |||||||||||||||| ||||| |||  |||||||||||||||    
T  33909438 attctagtaatgactgagcttgctacaaagaaagttggagctaagtctgggctagtgcccaggttagct-gagggtggctccgcccctgc 33909526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 44 - 136
Target Start/End: Original strand, 42152602 - 42152694
Alignment:
Q  44 aaatccgcagaaaaagcaagagattctagtaatggctgaagttgctacaaagaaagtaggagctgagtatgggctagtgcccaggctagctgg 136  Q
    |||||||||| |||||| |||| ||||| ||||||||| | |||||||||||||||||| ||||||   ||| ||||||||||| ||||||||    
T  42152602 aaatccgcaggaaaagcgagaggttctaataatggctggatttgctacaaagaaagtagaagctgaacctggactagtgcccagactagctgg 42152694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 44 - 125
Target Start/End: Complemental strand, 28816732 - 28816651
Alignment:
Q  44 aaatccgcagaaaaagcaagagattctagtaatggctgaagttgctacaaagaaagtaggagctgagtatgggctagtgccc 125  Q
    |||||||||||||||||||||| ||||| ||||||||| | ||||||||||| |||||| |||| ||| ||  |||||||||    
T  28816732 aaatccgcagaaaaagcaagaggttctaataatggctggacttgctacaaagtaagtagaagctaagtctgaactagtgccc 28816651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 44 - 152
Target Start/End: Complemental strand, 41010516 - 41010409
Alignment:
Q  44 aaatccgcagaaaaagcaagagattctagtaatggctgaagttgctacaaagaaagtaggagctgagtatgggctagtgcccaggctagctggagtttgg 143  Q
    ||||||||||||||| | | |  |||||||||| |||||| ||  |||||| ||||| |||||||||| | | |||||||||||||||||||| | ||||    
T  41010516 aaatccgcagaaaaaactaaaagttctagtaatagctgaacttagtacaaaaaaagttggagctgagtctagactagtgcccaggctagctgg-ggttgg 41010418  T
Q  144 ctccgcccc 152  Q
    |||||||||    
T  41010417 ctccgcccc 41010409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 44 - 155
Target Start/End: Original strand, 4570554 - 4570664
Alignment:
Q  44 aaatccgcagaaaaagcaagagattctagtaatggctgaagttgctacaaagaaagtaggagctgagtatgggctagtgcccaggctagctggagtttgg 143  Q
    ||||||||||  ||||| | || |||||||||||||||   || ||||||||||||||| |||| ||  |||||||||||||| ||||||||| |  |||    
T  4570554 aaatccgcaggtaaagcgaaagtttctagtaatggctgggcttactacaaagaaagtagaagctcagcctgggctagtgcccatgctagctgg-gggtgg 4570652  T
Q  144 ctccgcccctgc 155  Q
    ||||||||||||    
T  4570653 ctccgcccctgc 4570664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 67 - 155
Target Start/End: Complemental strand, 2475840 - 2475752
Alignment:
Q  67 ttctagtaatggctgaagttgctacaaagaaagtaggagctgagtatgggctagtgcccaggctagctggagtttggctccgcccctgc 155  Q
    |||||||||||||||   || ||||||||||||| |||||||||| ||| ||||||||||  |||||||| |  |||||||| ||||||    
T  2475840 ttctagtaatggctgggcttcctacaaagaaagttggagctgagtctggactagtgcccaaactagctggggggtggctccgtccctgc 2475752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 44 - 154
Target Start/End: Complemental strand, 13203808 - 13203698
Alignment:
Q  44 aaatccgcagaaaaagcaagagattctagtaatggctgaagttgctacaaagaaagtaggagctgagtatgggctagtgcccaggctagctggagtttgg 143  Q
    |||||||||| |||||| | | ||||||||||||| ||   |||||||||||||||| |||||||||  |||||    ||||||||||||||| |  |||    
T  13203808 aaatccgcaggaaaagctaaaaattctagtaatggttgggcttgctacaaagaaagttggagctgagcctgggcactagcccaggctagctggggggtgg 13203709  T
Q  144 ctccgcccctg 154  Q
    |||| ||||||    
T  13203708 ctccacccctg 13203698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 2 - 36
Target Start/End: Complemental strand, 17249428 - 17249394
Alignment:
Q  2 tacctcacctgagaacctaaatccttggcaaaatc 36  Q
    |||||||||||||||||||||||||||||||||||    
T  17249428 tacctcacctgagaacctaaatccttggcaaaatc 17249394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 44 - 154
Target Start/End: Original strand, 41114944 - 41115054
Alignment:
Q  44 aaatccgcagaaaaagcaagagattctagtaatggctgaagttgctacaaagaaagtaggagctgagtatgggctagtgcccaggctagctggagtttgg 143  Q
    |||||||||| |||| | | | ||||||||||||| |||  |||||||||||||||| ||||| |||  |||||    ||||||||||||||| |  |||    
T  41114944 aaatccgcaggaaaaactaaaaattctagtaatggttgagcttgctacaaagaaagttggagccgagcctgggcactagcccaggctagctgggggatgg 41115043  T
Q  144 ctccgcccctg 154  Q
    |||||||||||    
T  41115044 ctccgcccctg 41115054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 36
Target Start/End: Complemental strand, 25563045 - 25563011
Alignment:
Q  2 tacctcacctgagaacctaaatccttggcaaaatc 36  Q
    ||||||||||| |||||||||||||||||||||||    
T  25563045 tacctcacctgggaacctaaatccttggcaaaatc 25563011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 136
Target Start/End: Complemental strand, 27702064 - 27701998
Alignment:
Q  70 tagtaatggctgaagttgctacaaagaaagtaggagctgagtatgggctagtgcccaggctagctgg 136  Q
    |||||||||||| | ||| |||| ||||||| |||||||||  | ||||||||||||||||| ||||    
T  27702064 tagtaatggctggatttgttacagagaaagttggagctgagcctaggctagtgcccaggctaactgg 27701998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 110
Target Start/End: Complemental strand, 17148796 - 17148756
Alignment:
Q  70 tagtaatggctgaagttgctacaaagaaagtaggagctgag 110  Q
    |||||||||||||  |||||||||||||||| |||||||||    
T  17148796 tagtaatggctgagcttgctacaaagaaagttggagctgag 17148756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 6e-21; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 44 - 155
Target Start/End: Complemental strand, 5582516 - 5582406
Alignment:
Q  44 aaatccgcagaaaaagcaagagattctagtaatggctgaagttgctacaaagaaagtaggagctgagtatgggctagtgcccaggctagctggagtttgg 143  Q
    |||||||||| |||||| |||| |||||||||| ||||   |||||||||||||||||| || ||||  |||||||||||||||||||||||| |  |||    
T  5582516 aaatccgcaggaaaagcgagaggttctagtaatagctgtgcttgctacaaagaaagtagaagttgagcctgggctagtgcccaggctagctgg-gggtgg 5582418  T
Q  144 ctccgcccctgc 155  Q
    ||||||||||||    
T  5582417 ctccgcccctgc 5582406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 67 - 136
Target Start/End: Complemental strand, 34188808 - 34188739
Alignment:
Q  67 ttctagtaatggctgaagttgctacaaagaaagtaggagctgagtatgggctagtgcccaggctagctgg 136  Q
    |||||||||||||||   |||||||||||||||| |||||||||  | ||||||||||||||||||||||    
T  34188808 ttctagtaatggctgggcttgctacaaagaaagttggagctgagcctcggctagtgcccaggctagctgg 34188739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 70 - 136
Target Start/End: Complemental strand, 339350 - 339284
Alignment:
Q  70 tagtaatggctgaagttgctacaaagaaagtaggagctgagtatgggctagtgcccaggctagctgg 136  Q
    |||||||||||||  ||||||||||||||||  ||||||| | ||||||| ||||||||||||||||    
T  339350 tagtaatggctgagtttgctacaaagaaagttagagctgaatctgggctaatgcccaggctagctgg 339284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 45 - 155
Target Start/End: Original strand, 10397868 - 10397978
Alignment:
Q  45 aatccgcagaaaaagcaagagattctagtaatggctgaagttgctacaaagaaagtaggagctgagtatgggctagtgcccaggctagctggagtttggc 144  Q
    ||||||||| |||||| | | ||||| ||||||| ||   |||||||||||||||| |||||||||  |||||    ||||||||||||||| |  ||||    
T  10397868 aatccgcaggaaaagctaaaaattctcgtaatggttgggtttgctacaaagaaagttggagctgagcctgggcactagcccaggctagctggggggtggc 10397967  T
Q  145 tccgcccctgc 155  Q
    |||||||||||    
T  10397968 tccgcccctgc 10397978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 67 - 157
Target Start/End: Original strand, 28614481 - 28614571
Alignment:
Q  67 ttctagtaatggctgaagttgctacaaagaaagtaggagctgagtatgggctagtgcccaggctagctggagtttggctccgcccctgctg 157  Q
    ||||||||||||||    |||||||||||| | | |||||||||  |||||||||||||| ||||||||| |  ||||||| |||||||||    
T  28614481 ttctagtaatggctaggcttgctacaaagataattggagctgagcctgggctagtgcccacgctagctggggggtggctccacccctgctg 28614571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 42 - 155
Target Start/End: Original strand, 9047000 - 9047112
Alignment:
Q  42 gtaaatccgcagaaaaagcaagagattctagtaatggctgaagttgctacaaagaaagtaggagctgagtatgggctagtgcccaggctagctggagttt 141  Q
    |||||||||||| |||||| | | ||||||||||||| || | || ||||||||||||| | |||||||| ||| |    ||||||||||||||| |  |    
T  9047000 gtaaatccgcaggaaaagctaaaaattctagtaatggttggacttactacaaagaaagttgaagctgagtctggacactagcccaggctagctgg-gggt 9047098  T
Q  142 ggctccgcccctgc 155  Q
    ||||||||||||||    
T  9047099 ggctccgcccctgc 9047112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 67 - 151
Target Start/End: Original strand, 14939008 - 14939092
Alignment:
Q  67 ttctagtaatggctgaagttgctacaaagaaagtaggagctgagtatgggctagtgcccaggctagctggagtttggctccgccc 151  Q
    ||||||||||||||    |||||||||||||| | |||||||||  || ||||||| ||||||||||||| |  |||||||||||    
T  14939008 ttctagtaatggctaggtttgctacaaagaaaattggagctgagcctgagctagtgtccaggctagctggggggtggctccgccc 14939092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 44 - 151
Target Start/End: Original strand, 34249088 - 34249195
Alignment:
Q  44 aaatccgcagaaaaagcaagagattctagtaatggctgaagttgctacaaagaaagtaggagctgagtatgggctagtgcccaggctagctggagtttgg 143  Q
    |||||||||| |||||| | | ||||||||||||| ||   |||||||||||||||| |||| ||||| |||||    ||||| ||||||||| |  |||    
T  34249088 aaatccgcaggaaaagctaaaaattctagtaatggttgggcttgctacaaagaaagttggagttgagtctgggcactagcccaagctagctggggggtgg 34249187  T
Q  144 ctccgccc 151  Q
    ||||||||    
T  34249188 ctccgccc 34249195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 127
Target Start/End: Complemental strand, 2960724 - 2960642
Alignment:
Q  45 aatccgcagaaaaagcaagagattctagtaatggctgaagttgctacaaagaaagtaggagctgagtatgggctagtgcccag 127  Q
    ||||||||| |||||| | |  |||||||| |||||| | |||||||||||||| | |||||||||  ||||||||| |||||    
T  2960724 aatccgcaggaaaagctaaaagttctagtattggctggacttgctacaaagaaaattggagctgagcctgggctagtacccag 2960642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 6e-21; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 31 - 154
Target Start/End: Original strand, 41218445 - 41218568
Alignment:
Q  31 aaaatccgaaagtaaatccgcagaaaaagcaagagattctagtaatggctgaagttgctacaaagaaagtaggagctgagtatgggctagtgcccaggct 130  Q
    ||||| || |||||||||||||| |||||| | |  |||||||||||||||   ||||||||| |||||| |||||||||  ||||||||||| ||||||    
T  41218445 aaaatgcgcaagtaaatccgcaggaaaagctaaaagttctagtaatggctgggcttgctacaaggaaagtcggagctgagcctgggctagtgctcaggct 41218544  T
Q  131 agctggagtttggctccgcccctg 154  Q
    |||||| |  ||||||||||||||    
T  41218545 agctggggggtggctccgcccctg 41218568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 44 - 154
Target Start/End: Complemental strand, 9600396 - 9600287
Alignment:
Q  44 aaatccgcagaaaaagcaagagattctagtaatggctgaagttgctacaaagaaagtaggagctgagtatgggctagtgcccaggctagctggagtttgg 143  Q
    |||||||||| |||||| | |  |||||||||||||||   || ||||||||||| |||||||||||  |||||||||||||||||||||||| |  |||    
T  9600396 aaatccgcaggaaaagccaaaagttctagtaatggctgggattactacaaagaaaataggagctgagcttgggctagtgcccaggctagctgg-gggtgg 9600298  T
Q  144 ctccgcccctg 154  Q
    |||||||||||    
T  9600297 ctccgcccctg 9600287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 34 - 136
Target Start/End: Original strand, 41358692 - 41358794
Alignment:
Q  34 atccgaaagtaaatccgcagaaaaagcaagagattctagtaatggctgaagttgctacaaagaaagtaggagctgagtatgggctagtgcccaggctagc 133  Q
    ||||| ||||||||||| || |||||| |||  ||||| |||||| |||  |||||||||||||||||| |||||||| ||| |||| ||||||||||||    
T  41358692 atccgcaagtaaatccgtaggaaaagcgagaagttctaataatggttgagtttgctacaaagaaagtagaagctgagtctggactagcgcccaggctagc 41358791  T
Q  134 tgg 136  Q
    |||    
T  41358792 tgg 41358794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 31 - 154
Target Start/End: Complemental strand, 26278410 - 26278289
Alignment:
Q  31 aaaatccgaaagtaaatccgcagaaaaagcaagagattctagtaatggctgaagttgctacaaagaaagtaggagctgagtatgggctagtgcccaggct 130  Q
    |||||||| | |||||||||||  |||||| | | |||||||||||||||    ||||| |||||||| | |||||||||  ||||||||||||||||||    
T  26278410 aaaatccgtaggtaaatccgcatgaaaagctaaaaattctagtaatggctaggcttgctccaaagaaaattggagctgagcctgggctagtgcccaggct 26278311  T
Q  131 agctggagtttggctccgcccctg 154  Q
    |||||| |  ||||||||||||||    
T  26278310 agctgggg--tggctccgcccctg 26278289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 44 - 136
Target Start/End: Complemental strand, 54846096 - 54846004
Alignment:
Q  44 aaatccgcagaaaaagcaagagattctagtaatggctgaagttgctacaaagaaagtaggagctgagtatgggctagtgcccaggctagctgg 136  Q
    |||||| |||||||||| | || ||  |||||||| |||| |||||||||||||||||| || ||||| |||||||||| ||| |||||||||    
T  54846096 aaatccacagaaaaagcgaaaggtttaagtaatggatgaacttgctacaaagaaagtagaagttgagtctgggctagtgtccaagctagctgg 54846004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 44 - 154
Target Start/End: Original strand, 41199965 - 41200075
Alignment:
Q  44 aaatccgcagaaaaagcaagagattctagtaatggctgaagttgctacaaagaaagtaggagctgagtatgggctagtgcccaggctagctggagtttgg 143  Q
    |||||||||| |||||  |||| |||||||||| ||||   || ||||||| ||||||| |||||||  ||||||||||| ||||||| |||| |  |||    
T  41199965 aaatccgcaggaaaaggcagaggttctagtaattgctgggcttactacaaaaaaagtagaagctgagcctgggctagtgctcaggctaactggggggtgg 41200064  T
Q  144 ctccgcccctg 154  Q
    |||||||||||    
T  41200065 ctccgcccctg 41200075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 67 - 151
Target Start/End: Original strand, 33179222 - 33179306
Alignment:
Q  67 ttctagtaatggctgaagttgctacaaagaaagtaggagctgagtatgggctagtgcccaggctagctggagtttggctccgccc 151  Q
    ||||||||||||||| | |||||||||| ||||| |||||||||  |  ||||||||||||||||| ||| |  |||||||||||    
T  33179222 ttctagtaatggctggacttgctacaaaaaaagttggagctgagcctaagctagtgcccaggctagttgggggatggctccgccc 33179306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 44 - 158
Target Start/End: Original strand, 25391899 - 25392013
Alignment:
Q  44 aaatccgcagaaaaagcaagagattctagtaatggctgaagttgctacaaagaaagtaggagctgagtatgggctagtgcccaggctagctggagtttgg 143  Q
    |||||||||| |||||| | | |||||||||||||  |   ||||||| |||||||| |||||||||  |||||    ||||||||||||||| |  |||    
T  25391899 aaatccgcaggaaaagctaaaaattctagtaatggtagggcttgctacgaagaaagttggagctgagcctgggcattagcccaggctagctggggggtgg 25391998  T
Q  144 ctccgcccctgctgc 158  Q
    |||||||||||||||    
T  25391999 ctccgcccctgctgc 25392013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 44 - 154
Target Start/End: Complemental strand, 38239499 - 38239390
Alignment:
Q  44 aaatccgcagaaaaagcaagagattctagtaatggctgaagttgctacaaagaaagtaggagctgagtatgggctagtgcccaggctagctggagtttgg 143  Q
    |||||| || ||||||| |||| || |||||||||||||| |||||||||||| ||||  || ||||  ||| | |||||||||| ||||||| |  |||    
T  38239499 aaatccacaaaaaaagcgagaggttatagtaatggctgaacttgctacaaagatagtaaaagttgagcctggacgagtgcccaggttagctgg-gggtgg 38239401  T
Q  144 ctccgcccctg 154  Q
    |||||||||||    
T  38239400 ctccgcccctg 38239390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 42 - 155
Target Start/End: Complemental strand, 37516678 - 37516566
Alignment:
Q  42 gtaaatccgcagaaaaagcaagagattctagtaatggctgaagttgctacaaagaaagtaggagctgagtatgggctagtgcccaggctagctggagttt 141  Q
    |||||||||||| |||||| | | ||||||||||||| || | |||||||||||||||| ||| | |||  |||||    ||||||||||||||| |  |    
T  37516678 gtaaatccgcaggaaaagctaaaaattctagtaatggttggacttgctacaaagaaagttggaaccgagcctgggcactagcccaggctagctgg-gggt 37516580  T
Q  142 ggctccgcccctgc 155  Q
    ||||||||||||||    
T  37516579 ggctccgcccctgc 37516566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 38
Target Start/End: Original strand, 41358620 - 41358656
Alignment:
Q  2 tacctcacctgagaacctaaatccttggcaaaatccg 38  Q
    ||||||||||||||||||||||| |||||||||||||    
T  41358620 tacctcacctgagaacctaaatcattggcaaaatccg 41358656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 156
Target Start/End: Complemental strand, 53651944 - 53651833
Alignment:
Q  44 aaatccgcagaaaaagcaagagattctagtaatggctgaagttgctacaaagaaagtaggagctgagtatgggctagtgcccaggctagctggagtttgg 143  Q
    |||||||||| |||||| | | |||||||||||||  |   |||||||||||||||| |||||||||  |||||    ||||||||||||||| |  |||    
T  53651944 aaatccgcaggaaaagctaaaaattctagtaatggtagggcttgctacaaagaaagttggagctgagcctgggcactagcccaggctagctgg-gggtgg 53651846  T
Q  144 ctccgcccctgct 156  Q
    |||||||||||||    
T  53651845 ctccgcccctgct 53651833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 36
Target Start/End: Original strand, 33179130 - 33179164
Alignment:
Q  2 tacctcacctgagaacctaaatccttggcaaaatc 36  Q
    ||||||||||| |||||||||||||||||||||||    
T  33179130 tacctcacctgggaacctaaatccttggcaaaatc 33179164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 110
Target Start/End: Original strand, 47511719 - 47511785
Alignment:
Q  44 aaatccgcagaaaaagcaagagattctagtaatggctgaagttgctacaaagaaagtaggagctgag 110  Q
    |||||||||| |||||| | || ||||||||||||||| | ||| |||||||||| ||| |||||||    
T  47511719 aaatccgcaggaaaagcgaaaggttctagtaatggctggacttgttacaaagaaattagaagctgag 47511785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 119
Target Start/End: Complemental strand, 7500992 - 7500915
Alignment:
Q  42 gtaaatccgcagaaaaagcaagagattctagtaatggctgaagttgctacaaagaaagtaggagctgagtatgggcta 119  Q
    |||||||||||| |||||| | | ||||||||||||| ||   |||||||||||||||| ||||| |||  |||||||    
T  7500992 gtaaatccgcaggaaaagctaaaaattctagtaatggttgggcttgctacaaagaaagttggagccgagcctgggcta 7500915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 2e-20; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 42 - 156
Target Start/End: Complemental strand, 25237607 - 25237493
Alignment:
Q  42 gtaaatccgcagaaaaagcaagagattctagtaatggctgaagttgctacaaagaaagtaggagctgagtatgggctagtgcccaggctagctggagttt 141  Q
    |||||||||||||||| || | |  ||||||||||| ||| | || ||||||||||||| |||||||||  ||||||||||| |||||||||||| |  |    
T  25237607 gtaaatccgcagaaaacgctaaaagttctagtaatgactggacttactacaaagaaagttggagctgagcctgggctagtgctcaggctagctggggggt 25237508  T
Q  142 ggctccgcccctgct 156  Q
    |||||||||||||||    
T  25237507 ggctccgcccctgct 25237493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 46 - 156
Target Start/End: Complemental strand, 50383927 - 50383817
Alignment:
Q  46 atccgcagaaaaagcaagagattctagtaatggctgaagttgctacaaagaaagtaggagctgagtatgggctagtgcccaggctagctggagtttggct 145  Q
    |||||||| |||||| | |  |||||||||||||||   |||||||||||||||| |||||||||  ||||| |||||||||||||||||| |  |||||    
T  50383927 atccgcaggaaaagctaaaagttctagtaatggctgggcttgctacaaagaaagttggagctgagcctgggccagtgcccaggctagctggggggtggct 50383828  T
Q  146 ccgcccctgct 156  Q
    |||||||||||    
T  50383827 ccgcccctgct 50383817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 67 - 154
Target Start/End: Complemental strand, 32828233 - 32828146
Alignment:
Q  67 ttctagtaatggctgaagttgctacaaagaaagtaggagctgagtatgggctagtgcccaggctagctggagtttggctccgcccctg 154  Q
    |||||||||||| ||   || ||||||||||| | |||||||||  |||||||||||||||||||||||| |||||||||||||||||    
T  32828233 ttctagtaatggttgggattactacaaagaaaattggagctgagcctgggctagtgcccaggctagctggggtttggctccgcccctg 32828146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 43 - 156
Target Start/End: Complemental strand, 9694129 - 9694017
Alignment:
Q  43 taaatccgcagaaaaagcaagagattctagtaatggctgaagttgctacaaagaaagtaggagctgagtatgggctagtgcccaggctagctggagtttg 142  Q
    |||||||||||||||||  | |  ||||||||||||||||  || ||||||||||| | |||||||||  ||||||||||| ||||||||||||||  ||    
T  9694129 taaatccgcagaaaaagttaaaagttctagtaatggctgagcttactacaaagaaaattggagctgagcctgggctagtgcacaggctagctggag-gtg 9694031  T
Q  143 gctccgcccctgct 156  Q
     |||||||||||||    
T  9694030 actccgcccctgct 9694017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 31 - 136
Target Start/End: Original strand, 31929105 - 31929210
Alignment:
Q  31 aaaatccgaaagtaaatccgcagaaaaagcaagagattctagtaatggctgaagttgctacaaagaaagtaggagctgagtatgggctagtgcccaggct 130  Q
    |||||||| || ||||||||||| |||||| || |||||||||||||  ||   |||||||||||||||||  |||| ||| | |||||| |||||||||    
T  31929105 aaaatccgcaaataaatccgcaggaaaagcgagggattctagtaatgattgggcttgctacaaagaaagtaaaagctaagtcttggctagcgcccaggct 31929204  T
Q  131 agctgg 136  Q
    ||||||    
T  31929205 agctgg 31929210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 31 - 136
Target Start/End: Original strand, 11827088 - 11827193
Alignment:
Q  31 aaaatccgaaagtaaatccgcagaaaaagcaagagattctagtaatggctgaagttgctacaaagaaagtaggagctgagtatgggctagtgcccaggct 130  Q
    |||||| | ||||||||||||||||||||| | |  ||||||||||||||  | || ||||||||||| | |||||||||  ||||||||| |||| |||    
T  11827088 aaaatctgcaagtaaatccgcagaaaaagctaaaagttctagtaatggctagacttactacaaagaaaattggagctgagcctgggctagtacccatgct 11827187  T
Q  131 agctgg 136  Q
    | ||||    
T  11827188 aactgg 11827193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 85 - 154
Target Start/End: Complemental strand, 36947515 - 36947447
Alignment:
Q  85 ttgctacaaagaaagtaggagctgagtatgggctagtgcccaggctagctggagtttggctccgcccctg 154  Q
    ||||||||||||||||||||||||||  || ||||||||| | ||||||||| | |||||||||||||||    
T  36947515 ttgctacaaagaaagtaggagctgagcttgagctagtgcctaagctagctgg-ggttggctccgcccctg 36947447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 31 - 155
Target Start/End: Complemental strand, 2576213 - 2576090
Alignment:
Q  31 aaaatccgaaagtaaatccgcagaaaaagcaagagattctagtaatggctgaagttgctacaaagaaagtaggagctgagtatgggctagtgcccaggct 130  Q
    ||||| || |||||||| |||||||||||| | | ||||| ||||||| ||   |||||||||||||||| |||||||||  |||||    |||||| ||    
T  2576213 aaaattcgcaagtaaattcgcagaaaaagctaaaaattcttgtaatggttgggcttgctacaaagaaagttggagctgagcctgggcactagcccagact 2576114  T
Q  131 agctggagtttggctccgcccctgc 155  Q
    |||||| | ||||||||||||||||    
T  2576113 agctgg-ggttggctccgcccctgc 2576090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 42 - 154
Target Start/End: Original strand, 15034546 - 15034658
Alignment:
Q  42 gtaaatccgcagaaaaagcaagagattctagtaatggctgaagttgctacaaagaaagtaggagctgagtatgggctagtgcccaggctagctggagttt 141  Q
    ||||||| |||| |||||| | |  |||||||||||| ||   ||| |||||||||||| | |||||||  |||||||||||||||||||| ||| |  |    
T  15034546 gtaaatctgcaggaaaagcgaaaagttctagtaatggttgggcttgttacaaagaaagttgaagctgagcttgggctagtgcccaggctagttggggggt 15034645  T
Q  142 ggctccgcccctg 154  Q
    |||||||||||||    
T  15034646 ggctccgcccctg 15034658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 31 - 154
Target Start/End: Complemental strand, 4728600 - 4728477
Alignment:
Q  31 aaaatccgaaagtaaatccgcagaaaaagcaagagattctagtaatggctgaagttgctacaaagaaagtaggagctgagtatgggctagtgcccaggct 130  Q
    |||||||| | |||||||||||| |||||| | | ||||||||||||| |    |||||||||||||||| ||||| |||| |||||    ||||| |||    
T  4728600 aaaatccgcaggtaaatccgcaggaaaagctaaaaattctagtaatggtttggcttgctacaaagaaagttggagccgagtctgggcactagcccaagct 4728501  T
Q  131 agctggagtttggctccgcccctg 154  Q
    |||||| |  ||||||||||||||    
T  4728500 agctggggggtggctccgcccctg 4728477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 31 - 110
Target Start/End: Complemental strand, 46645645 - 46645566
Alignment:
Q  31 aaaatccgaaagtaaatccgcagaaaaagcaagagattctagtaatggctgaagttgctacaaagaaagtaggagctgag 110  Q
    |||||||| | ||||||||||||||||||| | | ||||||||||||| ||   ||||||||||| |||| |||||||||    
T  46645645 aaaatccgcaggtaaatccgcagaaaaagctaaaaattctagtaatggttgggcttgctacaaaggaagttggagctgag 46645566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 67 - 154
Target Start/End: Complemental strand, 52373756 - 52373670
Alignment:
Q  67 ttctagtaatggctgaagttgctacaaagaaagtaggagctgagtatgggctagtgcccaggctagctggagtttggctccgcccctg 154  Q
    ||||||||||| ||||  || ||| ||||||||| |||||||||  ||||||||||||||| |||||||| |  ||||||||||||||    
T  52373756 ttctagtaatgactgagcttactataaagaaagttggagctgagcctgggctagtgcccagactagctgg-gggtggctccgcccctg 52373670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 44 - 154
Target Start/End: Original strand, 2017512 - 2017622
Alignment:
Q  44 aaatccgcagaaaaagcaagagattctagtaatggctgaagttgctacaaagaaagtaggagctgagtatgggctagtgcccaggctagctggagtttgg 143  Q
    |||||||||| |||||| | | |||||||||||||  ||  |||||||||||||||| |||||| ||  |||||    ||||||||||||||| |  |||    
T  2017512 aaatccgcaggaaaagctaaaaattctagtaatggtagagcttgctacaaagaaagttggagctaagcctgggcactagcccaggctagctggggggtgg 2017611  T
Q  144 ctccgcccctg 154  Q
    |||||||||||    
T  2017612 ctccgcccctg 2017622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 44 - 154
Target Start/End: Complemental strand, 6017157 - 6017047
Alignment:
Q  44 aaatccgcagaaaaagcaagagattctagtaatggctgaagttgctacaaagaaagtaggagctgagtatgggctagtgcccaggctagctggagtttgg 143  Q
    ||||||||||||||||| | |  |||||||||| |  |   |||||||||||||||||| || ||||  |||||||||||||| ||||||| | |  |||    
T  6017157 aaatccgcagaaaaagcgacaagttctagtaatagtcgggcttgctacaaagaaagtagaagttgagcctgggctagtgcccatgctagctagggggtgg 6017058  T
Q  144 ctccgcccctg 154  Q
    |||||||||||    
T  6017057 ctccgcccctg 6017047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 67 - 153
Target Start/End: Complemental strand, 49745057 - 49744972
Alignment:
Q  67 ttctagtaatggctgaagttgctacaaagaaagtaggagctgagtatgggctagtgcccaggctagctggagtttggctccgcccct 153  Q
    ||||||||||||||  | ||| || ||||||||| |||||||||  ||| ||||||||||| |||||||| | ||||||||||||||    
T  49745057 ttctagtaatggctagacttgttataaagaaagttggagctgagcctggactagtgcccagactagctgg-ggttggctccgcccct 49744972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 44 - 155
Target Start/End: Complemental strand, 4552226 - 4552115
Alignment:
Q  44 aaatccgcagaaaaagcaagagattctagtaatggctgaagttgctacaaagaaagtaggagctgagtatgggctagtgcccaggctagctggagtttgg 143  Q
    |||||||||| |||||| | | |||||||||||||  |   |||||||||||||||| |||||||||  |||||    ||||||||||||||| |   ||    
T  4552226 aaatccgcaggaaaagctaaaaattctagtaatggtagggcttgctacaaagaaagttggagctgagcctgggcactagcccaggctagctggggggggg 4552127  T
Q  144 ctccgcccctgc 155  Q
    ||||||||||||    
T  4552126 ctccgcccctgc 4552115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 154
Target Start/End: Complemental strand, 8901800 - 8901735
Alignment:
Q  88 ctacaaagaaagtaggagctgagtatgggctagtgcccaggctagctggagtttggctccgcccctg 154  Q
    ||||||||||||| |||||||||  ||||||||||||||| | |||||| |  ||||||||||||||    
T  8901800 ctacaaagaaagttggagctgagcctgggctagtgcccagacaagctggcg-gtggctccgcccctg 8901735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 36
Target Start/End: Complemental strand, 25237686 - 25237652
Alignment:
Q  2 tacctcacctgagaacctaaatccttggcaaaatc 36  Q
    ||||||||||| |||||||||||||||||||||||    
T  25237686 tacctcacctgggaacctaaatccttggcaaaatc 25237652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 31 - 136
Target Start/End: Complemental strand, 9003610 - 9003505
Alignment:
Q  31 aaaatccgaaagtaaatccgcagaaaaagcaagagattctagtaatggctgaagttgctacaaagaaagtaggagctgagtatgggctagtgcccaggct 130  Q
    |||||||| | ||||||||| ||||||||  | |  |||| |||||| |||   |||||||||||||| | |||||||||  ||| |||||||| |||||    
T  9003610 aaaatccgcaggtaaatccgaagaaaaagttaaaagttcttgtaatgactgggcttgctacaaagaaaattggagctgagcctggactagtgcctaggct 9003511  T
Q  131 agctgg 136  Q
    ||||||    
T  9003510 agctgg 9003505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 151
Target Start/End: Complemental strand, 14044388 - 14044279
Alignment:
Q  42 gtaaatccgcagaaaaagcaagagattctagtaatggctgaagttgctacaaagaaagtaggagctgagtatgggctagtgcccaggctagctggagttt 141  Q
    |||||||||||| |||||| | | ||| | |||||||||    |||||||||||||| | |||||||||  || |||||||||||  |||||||| |  |    
T  14044388 gtaaatccgcaggaaaagctaaaaattttcgtaatggcttggcttgctacaaagaaaattggagctgagactgagctagtgcccaaactagctggggggt 14044289  T
Q  142 ggctccgccc 151  Q
    ||||||||||    
T  14044288 ggctccgccc 14044279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 155
Target Start/End: Complemental strand, 31364153 - 31364066
Alignment:
Q  67 ttctagtaatggctgaagttgctacaaagaaagtaggagctgagtatgggctagtgcccaggctagctggagtttggctccgcccctgc 155  Q
    |||||||||||| || | |||||||||||||||| ||||| |||  |||||    ||||||||||||||| |  |||||||||||||||    
T  31364153 ttctagtaatggttggatttgctacaaagaaagttggagccgagcctgggcactagcccaggctagctgg-gggtggctccgcccctgc 31364066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 136
Target Start/End: Original strand, 41972512 - 41972604
Alignment:
Q  44 aaatccgcagaaaaagcaagagattctagtaatggctgaagttgctacaaagaaagtaggagctgagtatgggctagtgcccaggctagctgg 136  Q
    |||||||||| |||||| | |  |||||||||||| |    |||||||||||||||| |||||||||  |  |||||||||||| ||||||||    
T  41972512 aaatccgcaggaaaagctaaaagttctagtaatggttcggcttgctacaaagaaagttggagctgagcctaagctagtgcccagcctagctgg 41972604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0075 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0075
Description:

Target: scaffold0075; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 45 - 134
Target Start/End: Complemental strand, 6950 - 6861
Alignment:
Q  45 aatccgcagaaaaagcaagagattctagtaatggctgaagttgctacaaagaaagtaggagctgagtatgggctagtgcccaggctagct 134  Q
    ||||||||| |||||| | | |||||||||||||  |   |||||||||||||||| |||||| ||| ||||||||||||||||||||||    
T  6950 aatccgcaggaaaagctaaaaattctagtaatggtagggcttgctacaaagaaagttggagctaagtctgggctagtgcccaggctagct 6861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0108 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0108
Description:

Target: scaffold0108; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 90 - 154
Target Start/End: Original strand, 21119 - 21183
Alignment:
Q  90 acaaagaaagtaggagctgagtatgggctagtgcccaggctagctggagtttggctccgcccctg 154  Q
    ||||||||||| | |||||||  |||||||||||||||||||||||| | |||||||||||||||    
T  21119 acaaagaaagttgaagctgagcctgggctagtgcccaggctagctggggattggctccgcccctg 21183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0638 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0638
Description:

Target: scaffold0638; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 42 - 136
Target Start/End: Complemental strand, 4141 - 4047
Alignment:
Q  42 gtaaatccgcagaaaaagcaagagattctagtaatggctgaagttgctacaaagaaagtaggagctgagtatgggctagtgcccaggctagctgg 136  Q
    |||||| ||||| |||||| | |  |||||||||||||||   |||||||||||||| | |||||||||  ||||||||||||||||||| ||||    
T  4141 gtaaattcgcaggaaaagctaaaagttctagtaatggctgggcttgctacaaagaaaattggagctgagcctgggctagtgcccaggctaactgg 4047  T

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Target: scaffold0021 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 67 - 136
Target Start/End: Original strand, 109409 - 109478
Alignment:
Q  67 ttctagtaatggctgaagttgctacaaagaaagtaggagctgagtatgggctagtgcccaggctagctgg 136  Q
    ||||||||||  |||  ||||||||||||||||| |||||||||  ||| |||||||||| |||||||||    
T  109409 ttctagtaataactggggttgctacaaagaaagttggagctgagcctggactagtgcccaagctagctgg 109478  T

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