View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2980_low_23 (Length: 220)
Name: NF2980_low_23
Description: NF2980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2980_low_23 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 159; Significance: 8e-85; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 5 - 209
Target Start/End: Complemental strand, 14399346 - 14399146
Alignment:
| Q |
5 |
gtattgattaacttatgttttagtttgatgttttgtttgatttctcttgattcatctctttaatcgtttcttcttctatttattttatcctctctctatt |
104 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
14399346 |
gtattgattaacttatgttttagtttcatgttttgtttgatttctctt-attcatctctttaatcgtttcttct---atttattttatcctctctctatc |
14399251 |
T |
|
| Q |
105 |
ggttcatttttaaagccttagaatggaatcattttggggcttagaattgttaaattcccacaatcttgacttcacatcttatcctctctcttgattcttc |
204 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
14399250 |
ggttcatttttaaagccttagaattgaatcattttggggcttagaattgttaaattcccaccatcttgacttcacatcttaacctctctcttgattcttc |
14399151 |
T |
|
| Q |
205 |
tctct |
209 |
Q |
| |
|
|||| |
|
|
| T |
14399150 |
cctct |
14399146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 5 - 157
Target Start/End: Complemental strand, 14404057 - 14403905
Alignment:
| Q |
5 |
gtattgattaacttatgttttagtttgatgttttgtttgatttctcttgattcatctctttaatcgtttcttcttctatttattttatcctctctctatt |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14404057 |
gtattgattaacttatgttttagtttgatgttttgtttgatttctcttgattaatctctttaatcgtttcttcttctatttattttatcctctctctatt |
14403958 |
T |
|
| Q |
105 |
ggttcatttttaaagccttagaatggaatcattttggggcttagaattgttaa |
157 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
14403957 |
ggttcatttttaaagccttagaatgaaatcattttggggcttagaattgttaa |
14403905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 6 - 157
Target Start/End: Complemental strand, 14402520 - 14402369
Alignment:
| Q |
6 |
tattgattaacttatgttttagtttgatgttttgtttgatttctcttgattcatctctttaatcgtttcttcttctatttattttatcctctctctattg |
105 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
14402520 |
tattgattaacttatgttttagtttgatgttttgtttgatttctcttgattcatctctttaatcgattcttcttctatttattttatcctctctctattg |
14402421 |
T |
|
| Q |
106 |
gttcatttttaaagccttagaatggaatcattttggggcttagaattgttaa |
157 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
14402420 |
gttcatttttaaagccttagaatgaaatcattttggggcttagaattgttaa |
14402369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 5 - 157
Target Start/End: Complemental strand, 14406839 - 14406687
Alignment:
| Q |
5 |
gtattgattaacttatgttttagtttgatgttttgtttgatttctcttgattcatctctttaatcgtttcttcttctatttattttatcctctctctatt |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14406839 |
gtattgattaacttatgttttagtttgatgttttgtttgattcctcttgattaatctctttaatcgtttcttcttctatttattttatcctctctctatt |
14406740 |
T |
|
| Q |
105 |
ggttcatttttaaagccttagaatggaatcattttggggcttagaattgttaa |
157 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
14406739 |
ggttcatttttaaagccttagaatgaaatcattttggggcttagaattgttaa |
14406687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 60 - 106
Target Start/End: Complemental strand, 14399149 - 14399103
Alignment:
| Q |
60 |
ctctttaatcgtttcttcttctatttattttatcctctctctattgg |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
14399149 |
ctctttaatcgtttcttcttctatttattttatactctctctattgg |
14399103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 33
Target Start/End: Complemental strand, 14403138 - 14403110
Alignment:
| Q |
5 |
gtattgattaacttatgttttagtttgat |
33 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
14403138 |
gtattgattaacttatgttttagtttgat |
14403110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 33
Target Start/End: Complemental strand, 14405920 - 14405892
Alignment:
| Q |
5 |
gtattgattaacttatgttttagtttgat |
33 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
14405920 |
gtattgattaacttatgttttagtttgat |
14405892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University