View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2980_low_4 (Length: 455)
Name: NF2980_low_4
Description: NF2980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2980_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 19 - 445
Target Start/End: Complemental strand, 13616834 - 13616410
Alignment:
| Q |
19 |
cttaccctctattacaccataggagataacaatgtattgacaatattagccacattatcattatcatcaactacaaatgtaatcaatagaatgttctaag |
118 |
Q |
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| T |
13616834 |
cttaccctctattac--cataggagataacaatgtattgacaatattagccacattatcattatcatcaactacaaatgtaatcaatagaatgttctaag |
13616737 |
T |
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| Q |
119 |
gcttatcatgtggaatcaagatgtcactagggatatcaataagaccatctagcaacgagccatcacttaaccatctatcgttccaaagagaaatattatc |
218 |
Q |
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| T |
13616736 |
gcttatcatgtggaatcaagatgtcactagggatatcaataagaccatctagcaacgagccatcacttaaccatctatcattccaaagagaaatattatc |
13616637 |
T |
|
| Q |
219 |
acccttcacatcgacttccttccctagcaaaaaattatgtagaacacaatctcctcttcacaaaaattgggttatgttcaatactagccttcaaaaaatt |
318 |
Q |
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| T |
13616636 |
acccttcatatcgacttccttccctagcaaaaaattatgtagaacacaatctcctcttcacaaaaattgggttatgttcaatactagccttcaaaaaatt |
13616537 |
T |
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| Q |
319 |
tgaataaggaaacacacaacttttaacagcatttactaaatcaaaagcaataggtctctaaagctcctaccatcatcattcttctcaacatagaannnnn |
418 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13616536 |
tgaataaggaaacacacaacttttaacagcattgactaaatcaaaagcaataggtctctaaagctcctaccatcatcattcttctcaacatagaattttt |
13616437 |
T |
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| Q |
419 |
nnnaaggttatccaatgaatgcctttg |
445 |
Q |
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| T |
13616436 |
tttaaggttatccaatgaatgcctttg |
13616410 |
T |
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