View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2980_low_5 (Length: 444)
Name: NF2980_low_5
Description: NF2980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2980_low_5 |
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| [»] scaffold0020 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 303; Significance: 1e-170; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 14 - 372
Target Start/End: Original strand, 44629630 - 44629991
Alignment:
| Q |
14 |
aggacggtggcttggcttgttttaaagtgttatttgattcatgaaatatatactaaagtattctgtttgacttgctttggaagatgaaatctaaaatgat |
113 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
44629630 |
aggacggtggcttggcttgttttaaagtgttaattgattcatgaaatatatactaaagtattctttttgacttgctttggaagatgaaatctaaaatgat |
44629729 |
T |
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| Q |
114 |
acagagtaatgaaatccagaagagagagattagcataannnnnnnagaggcag---cgaaatacaaaaagaaacagaagctttgatgcgttattatgtgc |
210 |
Q |
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| T |
44629730 |
acagagtaatgaaatccagaagagagagattagcatattttttttagaggcagtagcgaaatacaaaaagaaacagaagctttgatgcgttattatgtgc |
44629829 |
T |
|
| Q |
211 |
ctatgacagtttcagagttgcaggttgaatgaagaatatttgtcttcatcatattaaattacatatgttaggactaattaaggtaatgaggggtatttgt |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44629830 |
ctatgacagtttcagagttgcaggttgaatgaagaatatttgtcttcatcatattaaattacatatgttaggactaattaaggtaatgaggggtatttgt |
44629929 |
T |
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| Q |
311 |
tacataagttttaaatttgatgggtgtatttgtctatttttataatcacacatattttagac |
372 |
Q |
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| T |
44629930 |
tacataagttttaaatttgaagggtgtatttgtctatttttataaccacgcatattttagac |
44629991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 212 - 298
Target Start/End: Original strand, 47730012 - 47730095
Alignment:
| Q |
212 |
tatgacagtttcagagttgcaggttgaatgaagaatatttgtcttcatcatattaaattacatatgttaggactaattaaggtaatg |
298 |
Q |
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| T |
47730012 |
tatgacagtttcagagttgcaggttgaatgaa---tatttgccttcatgatatttaattatatatgttaggagtaattaaggtaatg |
47730095 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 311 - 372
Target Start/End: Complemental strand, 10036397 - 10036336
Alignment:
| Q |
311 |
tacataagttttaaatttgatgggtgtatttgtctatttttataatcacacatattttagac |
372 |
Q |
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| T |
10036397 |
tacataagttttaaatttgaagggggcatttgcctatttttataatcacacaaattttagac |
10036336 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 311 - 369
Target Start/End: Complemental strand, 24240879 - 24240821
Alignment:
| Q |
311 |
tacataagttttaaatttgatgggtgtatttgtctatttttataatcacacatatttta |
369 |
Q |
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| T |
24240879 |
tacataagttttaaagttgaggggggtatttgcctatttttataatcacaaaaatttta |
24240821 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 336 - 371
Target Start/End: Complemental strand, 25143568 - 25143533
Alignment:
| Q |
336 |
gtatttgtctatttttataatcacacatattttaga |
371 |
Q |
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| T |
25143568 |
gtatttgtctatttttataatcacacagattttaga |
25143533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 311 - 369
Target Start/End: Original strand, 35237143 - 35237200
Alignment:
| Q |
311 |
tacataagttttaaatttgatgggtgtatttgtctatttttataatcacacatatttta |
369 |
Q |
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| T |
35237143 |
tacataagttttaaatttgagagga-tatttatctatttttataatcacacatatttta |
35237200 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 298 - 343
Target Start/End: Complemental strand, 21268115 - 21268071
Alignment:
| Q |
298 |
gaggggtatttgttacataagttttaaatttgatgggtgtatttgt |
343 |
Q |
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| T |
21268115 |
gaggggtatttgctacataagttttaaatttga-gggggtatttgt |
21268071 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 314 - 369
Target Start/End: Original strand, 10326655 - 10326710
Alignment:
| Q |
314 |
ataagttttaaatttgatgggtgtatttgtctatttttataatcacacatatttta |
369 |
Q |
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|||||| |||||||||| || ||||||| ||||||||||||||||||| |||||| |
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| T |
10326655 |
ataagtgttaaatttgagaggggtatttgcctatttttataatcacacaaatttta |
10326710 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0020 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0020
Description:
Target: scaffold0020; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 312 - 369
Target Start/End: Original strand, 8971 - 9028
Alignment:
| Q |
312 |
acataagttttaaatttgatgggtgtatttgtctatttttataatcacacatatttta |
369 |
Q |
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|||||||| ||||| |||| ||| ||||||| ||||||||||||||||| | |||||| |
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| T |
8971 |
acataagtattaaagttgaggggggtatttgcctatttttataatcacatagatttta |
9028 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 303 - 368
Target Start/End: Original strand, 22924016 - 22924080
Alignment:
| Q |
303 |
gtatttgttacataagttttaaatttgatgggtgtatttgtctatttttataatcacacatatttt |
368 |
Q |
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|||||||||| ||||||||||||||||| | | || |||| |||||||||||||||||| ||||| |
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| T |
22924016 |
gtatttgttatataagttttaaatttga-gaggataattgtttatttttataatcacacaaatttt |
22924080 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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