View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2980_low_6 (Length: 384)
Name: NF2980_low_6
Description: NF2980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2980_low_6 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 10 - 367
Target Start/End: Complemental strand, 29064026 - 29063665
Alignment:
| Q |
10 |
aagaatatgacagagagaaagagaattaataagaggaaaaaa-ttcaattttgaacaaattaatactagaaacttcacacttttaattctaaatcaaaac |
108 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29064026 |
aagaatatgacagagagacagagaattaataagaggaaaaaaattcaattttgaacaaattaatactagaaacttcacacttttaattctaaatcaaaac |
29063927 |
T |
|
| Q |
109 |
ataaaaactccattaaaatgcaacagcatttcaaaggaaaaatgtctcnnnnnnn-ctttctacttttacagggaattttctacactcactcac--acta |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
29063926 |
ataaaaactccattaaaatgcaacagcatttcaaaggaaaaatgtcttttttttttctttctacttttacagggaattttctacactcactcactcacta |
29063827 |
T |
|
| Q |
206 |
tgttgctggaaagtgttactctttatcaccacaaacttcaacttttaccccaaattgagaacaaatcctagcatcttctgcaccattctttgaattaaaa |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29063826 |
tgttgctggaaagtgttactctttatcaccacaaacttcaacttttacaccaaattgagaacaaatcctagcatcttctgcaccattctttgaattaaaa |
29063727 |
T |
|
| Q |
306 |
tgttgttgagactgtttacaatgtgcaatagctccttcaactgaaccttccacctcataatt |
367 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29063726 |
tgttgctgagactgtttacaatgtgcaatagctccttcaactgaaccttccacctcataatt |
29063665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University