View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2980_low_7 (Length: 377)
Name: NF2980_low_7
Description: NF2980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2980_low_7 |
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| [»] scaffold0286 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 315; Significance: 1e-177; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 10 - 358
Target Start/End: Complemental strand, 2346591 - 2346242
Alignment:
| Q |
10 |
aagaatatcaaaaatatgatttcaattgattgtatttaacggacttgctaaaataaaccttaagtcatgggctgattgaaaaagttaattacgctcattg |
109 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2346591 |
aagaatatcaaaaatatgatttcaattgattgtatttaacggacttgctaaaataaaccttaagtcatgggctgattgaaaaagttaattacgctcattg |
2346492 |
T |
|
| Q |
110 |
nnnnnnnnn-tatgtattacttaatgactaagatataaatttaaatatgaattgtcgagttgaatgtgaatattttacaaaattatcctataaaatatat |
208 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2346491 |
aaaaaaaaaatatgtattacttaatgactaagatataaatttaaatatgaattgtcgagttgaatgtgaatattttacaaaattatcctataaaatatat |
2346392 |
T |
|
| Q |
209 |
tataaattagacatgttggctaacactttcttcacatcagaatttcaattctccatttttctttctttcgatttcgtatctctctttacacttcaaatgg |
308 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2346391 |
tataaattagacatgttggctaacactttcttcacatcagaatttcaattctccatttttctttctttcgatttcgtatctctctttacacttcaaatgg |
2346292 |
T |
|
| Q |
309 |
ctcaaaaaatcaattatgtttctcatatctccccttcgaaagaaaattgg |
358 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2346291 |
ctcaaaaaatcaattatgtttctcatatctccccttcgaaagaaaattgg |
2346242 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 10 - 72
Target Start/End: Original strand, 6301186 - 6301247
Alignment:
| Q |
10 |
aagaatatcaaaaatatgatttcaattgattgtatttaacggacttgctaaaataaaccttaa |
72 |
Q |
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|||||||||||||||||||||||| ||||||||| |||| |||||||||||||||||| |||| |
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| T |
6301186 |
aagaatatcaaaaatatgatttcagttgattgtacttaa-ggacttgctaaaataaactttaa |
6301247 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 199 - 244
Target Start/End: Complemental strand, 2347409 - 2347364
Alignment:
| Q |
199 |
taaaatatattataaattagacatgttggctaacactttcttcaca |
244 |
Q |
| |
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|||||| ||||||||||||||||| ||||| ||||||||||||||| |
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|
| T |
2347409 |
taaaatctattataaattagacatattggccaacactttcttcaca |
2347364 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 62 - 105
Target Start/End: Original strand, 6301269 - 6301312
Alignment:
| Q |
62 |
ataaaccttaagtcatgggctgattgaaaaagttaattacgctc |
105 |
Q |
| |
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||||||||||| |||||||||||||||||||||| |||| |||| |
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| T |
6301269 |
ataaaccttaaatcatgggctgattgaaaaagtttattatgctc |
6301312 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 10 - 356
Target Start/End: Complemental strand, 3648901 - 3648551
Alignment:
| Q |
10 |
aagaatatcaaaaatatgatttcaattgattgtatttaacggacttgctaaaataaaccttaagtcatgggctgattgaaaaagttaattacgctcattg |
109 |
Q |
| |
|
|||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |
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| T |
3648901 |
aagaatatcaaaaatatgatttcagttaattgtatttaacggacttgctaaaataaaccttaagtcatgggctgattgaaaaagttaattacactccttg |
3648802 |
T |
|
| Q |
110 |
nnnnnnnnn----tatgtattacttaatgactaagatataaatttaaatatgaattgtcgagttgaatgtgaatattttacaaaattatcctataaaata |
205 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| |
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| T |
3648801 |
acaaaaaaaacaatatgtattacttaatgactaagatataaatttaaatatgaattgtcgagttgaatgtgaatattttacgaaattatcctgtaaaata |
3648702 |
T |
|
| Q |
206 |
tattataaattagacatgttggctaacactttcttcacatcagaatttcaattctccatttttctttctttcgatttcgtatctctctttacacttcaaa |
305 |
Q |
| |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3648701 |
tactataaattagacatgttggctaacactttcttcacatcagaatttcaattctccatttttctttctttcgatttcgtatctctctttacacttcaaa |
3648602 |
T |
|
| Q |
306 |
tggctcaaaaaatcaattatgtttctcatatctccccttcgaaagaaaatt |
356 |
Q |
| |
|
|||||||||||||||||||||||||| |||| ||||||||||||||||||| |
|
|
| T |
3648601 |
tggctcaaaaaatcaattatgtttctgatatttccccttcgaaagaaaatt |
3648551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 263; Significance: 1e-146; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 10 - 358
Target Start/End: Complemental strand, 30321421 - 30321072
Alignment:
| Q |
10 |
aagaatatcaaaaatatgatttcaattgattgtatttaacggacttgctaaaataaaccttaagtcatgggctgattgaaaaagttaattacgctcattg |
109 |
Q |
| |
|
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
30321421 |
aagaatatcaaaaatatgatttcagttaattgtatttaacggacttgctaaaataaaccttaagtcatgggctgattgaaaaagttaattacgctgcttc |
30321322 |
T |
|
| Q |
110 |
nnnnnnnnnta-tgtattacttaatgactaagatataaatttaaatatgaattgtcgagttgaatgtgaatattttacaaaattatcctataaaatatat |
208 |
Q |
| |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| |
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|
| T |
30321321 |
acaaaaaaaaaatgtattacttaatgactaagatataaatttaaatatgaattgtcgagttgaatgtgaatattttacgaaattatcctgtaaaatatac |
30321222 |
T |
|
| Q |
209 |
tataaattagacatgttggctaacactttcttcacatcagaatttcaattctccatttttctttctttcgatttcgtatctctctttacacttcaaatgg |
308 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30321221 |
tataaattagacatcttggctaacactttcttcacatcagaatttcaattctccatttttctttctttcgatttcgtatctctctttacacttcaaatgg |
30321122 |
T |
|
| Q |
309 |
ctcaaaaaatcaattatgtttctcatatctccccttcgaaagaaaattgg |
358 |
Q |
| |
|
|||||||||||||||||||||| |||| ||||||||||||||||||||| |
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|
| T |
30321121 |
ttcaaaaaatcaattatgtttctgatatttccccttcgaaagaaaattgg |
30321072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 181 - 244
Target Start/End: Original strand, 14185789 - 14185852
Alignment:
| Q |
181 |
ttttacaaaattatcctataaaatatattataaattagacatgttggctaacactttcttcaca |
244 |
Q |
| |
|
||||||| |||| |||| |||||| ||||||||||||||| | ||| | ||||||||||||||| |
|
|
| T |
14185789 |
ttttacataattgtcctctaaaatgtattataaattagacctattgaccaacactttcttcaca |
14185852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 249; Significance: 1e-138; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 10 - 358
Target Start/End: Original strand, 25335413 - 25335763
Alignment:
| Q |
10 |
aagaatatcaaaaatatgatttcaattgattgtatttaacggacttgctaaaataaaccttaagtcatgggctgattgaaaaagttaattacgctcattg |
109 |
Q |
| |
|
|||||||||||||||||||||||| || ||||||| |||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
25335413 |
aagaatatcaaaaatatgatttcagttaattgtatgcaacgaatttgctaaaataaaccttaagtcatgggctgattgaaaaagttaattacgctccttg |
25335512 |
T |
|
| Q |
110 |
nnnnnnnnn--tatgtattacttaatgactaagatataaatttaaatatgaattgtcgagttgaatgtgaatattttacaaaattatcctataaaatata |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| ||||||||| |
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|
| T |
25335513 |
aaaaaaaaaaatatgtattacttaatgactaagatataaatttaaatatgaattgtcgagtttaatgtgaatattttacgaaattatcctgtaaaatata |
25335612 |
T |
|
| Q |
208 |
ttataaattagacatgttggctaacactttcttcacatcagaatttcaattctccatttttctttctttcgatttcgtatctctctttacacttcaaatg |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
25335613 |
ctataaattagacatgttggctaacactttcttcacatcataatttcaattctccatttttctttctttcgattttgtatctctctttacacttcaaatg |
25335712 |
T |
|
| Q |
308 |
gctcaaaaaatcaattatgtttctcatatctccccttcgaaagaaaattgg |
358 |
Q |
| |
|
|||||||||||||||||||||| | |||| ||||||||||||||||||||| |
|
|
| T |
25335713 |
gctcaaaaaatcaattatgtttatgatatttccccttcgaaagaaaattgg |
25335763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 10 - 72
Target Start/End: Original strand, 2197632 - 2197693
Alignment:
| Q |
10 |
aagaatatcaaaaatatgatttcaattgattgtatttaacggacttgctaaaataaaccttaa |
72 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| |||| |
|
|
| T |
2197632 |
aagaatatcaaaaatatgatttcagttgattgtatttaa-ggacttgctaaaataaacgttaa |
2197693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 61
Target Start/End: Complemental strand, 24200094 - 24200051
Alignment:
| Q |
18 |
caaaaatatgatttcaattgattgtatttaacggacttgctaaa |
61 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
24200094 |
caaaaatatgatttcagttgattgtatttaacggacttgctaaa |
24200051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 179 - 247
Target Start/End: Original strand, 15651898 - 15651966
Alignment:
| Q |
179 |
tattttacaaaattatcctataaaatatattataaattagacatgttggctaacactttcttcacatca |
247 |
Q |
| |
|
|||||||| |||||||||| ||||||||| |||||||||||| | ||||||| | ||||||||||||| |
|
|
| T |
15651898 |
tattttacgaaattatcctttaaaatatactataaattagacctattggctagccgtttcttcacatca |
15651966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 179 - 219
Target Start/End: Original strand, 12578180 - 12578220
Alignment:
| Q |
179 |
tattttacaaaattatcctataaaatatattataaattaga |
219 |
Q |
| |
|
|||||||| |||||||||| ||||||||| ||||||||||| |
|
|
| T |
12578180 |
tattttacgaaattatcctgtaaaatataatataaattaga |
12578220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0286 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: scaffold0286
Description:
Target: scaffold0286; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 10 - 72
Target Start/End: Complemental strand, 22642 - 22581
Alignment:
| Q |
10 |
aagaatatcaaaaatatgatttcaattgattgtatttaacggacttgctaaaataaaccttaa |
72 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| |||| |
|
|
| T |
22642 |
aagaatatcaaaaatatgatttcagttgattgtatttaa-ggacttgctaaaataaacgttaa |
22581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 10 - 72
Target Start/End: Original strand, 11307443 - 11307504
Alignment:
| Q |
10 |
aagaatatcaaaaatatgatttcaattgattgtatttaacggacttgctaaaataaaccttaa |
72 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| |||| |
|
|
| T |
11307443 |
aagaatatcaaaaatatgatttcagttgattgtatttaa-ggacttgctaaaataaacgttaa |
11307504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 179 - 247
Target Start/End: Original strand, 612181 - 612249
Alignment:
| Q |
179 |
tattttacaaaattatcctataaaatatattataaattagacatgttggctaacactttcttcacatca |
247 |
Q |
| |
|
|||||||| |||||||||| ||||||||| |||||||||||| | ||||||| || ||||||||||||| |
|
|
| T |
612181 |
tattttacgaaattatcctgtaaaatatactataaattagacctattggctagcagtttcttcacatca |
612249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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