View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2981_low_11 (Length: 336)
Name: NF2981_low_11
Description: NF2981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2981_low_11 |
 | |
|
| [»] chr1 (2 HSPs) |
| |
|
| [»] scaffold0477 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 255; Significance: 1e-142; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 18 - 336
Target Start/End: Original strand, 2156615 - 2156932
Alignment:
| Q |
18 |
gtaaactctaaattaccatattaactagaattgttgggacaatgaacatccatctcgttcgtattttggatatccatatagctattgaagaccgttgaag |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
2156615 |
gtaaactctaaattaccatattaactagaattgttgggacaatgaacatccatctcgttcgtattttggatatccatatagctattgaagactgttgaag |
2156714 |
T |
|
| Q |
118 |
tgattaatttcagaaaatttagcagcgcgccgttgaggacaaagaaattgttcaattgactatttatccaataataacatacttgatattaataaaagat |
217 |
Q |
| |
|
||| ||||| |||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| |||||||||||| |
|
|
| T |
2156715 |
tgactaattccagaaaatttagcagcgctccgttgaggacaaagaaattgttcaagtgactatttatccagtaataacatacttgatgttaataaaagat |
2156814 |
T |
|
| Q |
218 |
cctttacatgaaggttggctagagatttagtgtaaaaatactaagttgataatgagaatattgcaacttttttggatttgattcgatggatgtttatcat |
317 |
Q |
| |
|
|||||||| ||||||||||| ||||||| | ||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| |||||||||||| |
|
|
| T |
2156815 |
cctttacacgaaggttggcttgagatttcgcgtaaaaatactaagttgataagaagaatattgcaacctttttggatttgattcgat-gatgtttatcat |
2156913 |
T |
|
| Q |
318 |
tacacacatgaaggagtag |
336 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
2156914 |
tacacacatgaaggagtag |
2156932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 63 - 198
Target Start/End: Complemental strand, 593165 - 593036
Alignment:
| Q |
63 |
acatccatctcgttcgtattttggatatccatatagctattgaagaccgttgaagtgattaatttcagaaaatttagcagcgcgccgttgaggacaaaga |
162 |
Q |
| |
|
|||| |||||||||||||||||||||| ||||| | | || |||||| ||||||||| ||||| ||| |||||||||| ||||||||||||||| |
|
|
| T |
593165 |
acattcatctcgttcgtattttggatacccataaaaccatcgaagactattgaagtgactaattccaggaaatttagca-----acgttgaggacaaaga |
593071 |
T |
|
| Q |
163 |
aattgttcaattgactatttatccaataataacata |
198 |
Q |
| |
|
|| |||| || |||||||||||| | |||||||||| |
|
|
| T |
593070 |
aa-tgttgaagtgactatttatctagtaataacata |
593036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0477 (Bit Score: 165; Significance: 3e-88; HSPs: 1)
Name: scaffold0477
Description:
Target: scaffold0477; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 39 - 333
Target Start/End: Complemental strand, 9028 - 8729
Alignment:
| Q |
39 |
taactagaattgttgggacaatgaacatccatctcgttcgtattttggatatccatatagctattgaagaccgttgaagtgattaatttcagaaaattta |
138 |
Q |
| |
|
|||||||||| ||||||||||| |||||||||||||||||||||||||||| ||||||| | || |||||| |||||||||| ||||| | | ||||||| |
|
|
| T |
9028 |
taactagaatggttgggacaataaacatccatctcgttcgtattttggatacccatataaccatcgaagactgttgaagtgactaattccgggaaattta |
8929 |
T |
|
| Q |
139 |
gcagcgcgccgttgaggacaaagaaattgttcaattgactatttatccaataataacatacttgatattaataaaagatcctttacatgaaggttggcta |
238 |
Q |
| |
|
|||||| |||||||||||||||||||| || |||||||||||||| |||||||||||||||| |||||||||||||||||||| |||||||||||| |
|
|
| T |
8928 |
gcagcg-----ttgaggacaaagaaattgttgaagtgactatttatccagtaataacatacttgatgttaataaaagatcctttacaggaaggttggcta |
8834 |
T |
|
| Q |
239 |
gagatttagtgtaaaaata---------ctaagttgataatgagaatattgcaa-cttttttggatttgattcgatggatgtttatcattacacacatga |
328 |
Q |
| |
|
||||||| ||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| |||||| | |
|
|
| T |
8833 |
gagatttcgtgtaaaaatactagtcccgctaagttgataatgagaatattgcaatcttttttggatttgattccatggatgtttatcattatacacataa |
8734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 164; Significance: 1e-87; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 39 - 333
Target Start/End: Complemental strand, 18180030 - 18179732
Alignment:
| Q |
39 |
taactagaattgttgggacaatgaacatccatctcgttcgtattttggatatccatatagctattgaagaccgttgaagtgattaatttcagaaaattta |
138 |
Q |
| |
|
|||||||||| ||||||||||| |||||||||||||||||||||||||||| ||||||| | || |||||| |||||||||| ||||| | | ||||||| |
|
|
| T |
18180030 |
taactagaatggttgggacaataaacatccatctcgttcgtattttggatacccatataaccatcgaagactgttgaagtgactaattccgggaaattta |
18179931 |
T |
|
| Q |
139 |
gcagcgcgccgttgaggacaaagaaattgttcaattgactatttatccaataataacatacttgatattaataaaagatcctttacatgaaggttggcta |
238 |
Q |
| |
|
|||||| |||||||||||||||||||| || |||||||||||||| |||||||||||||||| |||||||||||||||||||| |||||||||||| |
|
|
| T |
18179930 |
gcagcg-----ttgaggacaaagaaattgttgaagtgactatttatccagtaataacatacttgatgttaataaaagatcctttacaggaaggttggcta |
18179836 |
T |
|
| Q |
239 |
gagatttagtgtaaaaata---------ctaagttgataatgagaatattgcaacttttttggatttgattcgatggatgtttatcattacacacatgaa |
329 |
Q |
| |
|
||||||| ||||||||||| |||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| |||||| || |
|
|
| T |
18179835 |
gagatttcgtgtaaaaatactagtcccgctaagttgataatgagaatattgcaatctttttggatttgattccatggatgtttatcattatacacataaa |
18179736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 157 - 333
Target Start/End: Original strand, 4639202 - 4639387
Alignment:
| Q |
157 |
caaagaaattgttcaattgactatttatccaataataacatacttgatattaataaaagatcctttacatgaaggttggctagagatttagtgtaaaaat |
256 |
Q |
| |
|
||||||||||||| || |||||||||||||| |||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| |||||||||| |
|
|
| T |
4639202 |
caaagaaattgttgaagtgactatttatccagtaataacatacttgatgttaataaaagatcctttacaggaaggttggctagagatttcgtgtaaaaat |
4639301 |
T |
|
| Q |
257 |
a---------ctaagttgataatgagaatattgcaacttttttggatttgattcgatggatgtttatcattacacacatgaaggag |
333 |
Q |
| |
|
| |||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| |||||| |||||| |
|
|
| T |
4639302 |
actagtcccgctaagttgataatgagaatattgcaatctttttggatttgattccatggatgtttatcattatacacataaaggag |
4639387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 103 - 260
Target Start/End: Complemental strand, 46144422 - 46144270
Alignment:
| Q |
103 |
tgaagaccgttgaagtgattaatttcagaaaatttagcagcgcgccgttgaggacaaagaaattgttcaattgactatttatccaataataacatacttg |
202 |
Q |
| |
|
||||||| |||||||||| ||||| | | |||||||||||| || ||||||||||||||||| || ||||||||||| || |||||||||||||| |
|
|
| T |
46144422 |
tgaagactgttgaagtgactaattacgggaaatttagcagca-----ttaaggacaaagaaattgttgaagtgactatttatgcagtaataacatacttg |
46144328 |
T |
|
| Q |
203 |
atattaataaaagatcctttacatgaaggttggctagagatttagtgtaaaaatacta |
260 |
Q |
| |
|
|| |||||||||||||||||||| ||||||||||||||||||| |||||||||||||| |
|
|
| T |
46144327 |
atgttaataaaagatcctttacaggaaggttggctagagatttcgtgtaaaaatacta |
46144270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 258 - 326
Target Start/End: Original strand, 14962693 - 14962762
Alignment:
| Q |
258 |
ctaagttgataatgagaatattgcaa-cttttttggatttgattcgatggatgtttatcattacacacat |
326 |
Q |
| |
|
|||||||||| |||||||| ||| || ||||||||||||||||||||| |||| |||||||||||||||| |
|
|
| T |
14962693 |
ctaagttgatgatgagaatgttgtaatcttttttggatttgattcgattgatgcttatcattacacacat |
14962762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 150 - 224
Target Start/End: Original strand, 14962550 - 14962624
Alignment:
| Q |
150 |
ttgaggacaaagaaattgttcaattgactatttatccaataataacatacttgatattaataaaagatcctttac |
224 |
Q |
| |
|
|||||||||| |||||| || || |||||||||||| | ||||||||| |||||| |||||||||||| |||||| |
|
|
| T |
14962550 |
ttgaggacaaggaaatttttgaagtgactatttatcgagtaataacattcttgatcttaataaaagattctttac |
14962624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University