View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2981_low_12 (Length: 267)
Name: NF2981_low_12
Description: NF2981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2981_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 16 - 251
Target Start/End: Complemental strand, 11783535 - 11783300
Alignment:
| Q |
16 |
caaagttcatgataaaacccttatcatatattggattgtcctccgttatttcacgaacacttccattgacgacacccatcctatgaaatgacggcttctt |
115 |
Q |
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| T |
11783535 |
caaagttcatgataaaacccttatcatatattggatcgtcctccgttatttcacgaacacttccattgacgacacccatcctatgaaatgacggcttctt |
11783436 |
T |
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| Q |
116 |
gaaaagagtggctgtaatcgaaacaacaccagcagccttaatacttcctccaacaattccaccatacagttgtccatgagtgccggagaagataatggag |
215 |
Q |
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||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11783435 |
gaaaagactggccgtaatcgaaacaacaccagcagccttaatacttcctccaacaattccaccatacagttgtccatgagtgccggagaagataatggag |
11783336 |
T |
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| Q |
216 |
aaagaggaatatgttgggttggttctcatgaaccga |
251 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
11783335 |
aaagaggaatatgttgggttggttctcatgaaccga |
11783300 |
T |
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